| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1052 |
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| Symbol | |
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| ID | 3568215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 1154045 |
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| End bp | 1155802 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637679514 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_284278 |
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| Protein GI | 71906691 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGAG GGGTCGGGGA AGAAATAATT GAACAATTGT TTTCTGATAG CAAGGTGGGA
GCGGCGGGAA GTGCTACGGC GATGACCGAG CAGGAAACAA TGTTCCGAAG CACAATGGAG
GCCGCGCAGG TCGGTATCTT CGTGCTTCAG AATCAGCGCT TCAAGTACGT CAATCCCTTC
CTTGTGGGCA TGTTTGGCTA TTCTGCCGAG GAGTTGCTTG AGCAGATGGG GCCGCTTGAC
CTCATCCTGC CCGAGCAGCA CGCATTCGTG ATCGAGCAGA TGCAGTTACG GGCGGCCGGT
GTCCTTGGAC ATAACTATGA ATTGACCGGA TTACGCAAGG ACGGCTCGAC CTTGCCGATC
ATGGTGCTCG GGTCGCCATC GGTGATTGGC GGGTTGCCGG CTTCCGTCGG CACCGTGCTG
GATATTTCTG CGCAGAAAGC AGCCGAGCAA AGAATCCGCG AACTGGCTGA CTACGATGTA
TTGACTGGCT TGCCCAATCG CCGATTGCTG CGCGAGCGTT TCGAGCAATT GCTCGCTGCG
GCTGAGCGAG AGAAATCCGA GATTGCCGTC ATCTTCCTCG ATCTCGACCA TTTCAAGCGG
GTCAATGATT CGCTTGGGCA CAGCGTCGGT GACGAGTTGT TGTGCGAAGT GGCCCGGCGT
CTGGATAGTG TGGTCCGGCG CATCGATACC CTGGCCCGGC TGGGGGGCGA CGAGTTCATT
TTTGCCATGC CTGGTTTCCA TACCGCGGCG GCTGTTGAAG TGGCACGGCG GCTGGTTGAG
GTTTTCTCCC GGCCGTTCGA GGTGGCCGGC CACGAGTTGA CCGTGACGCC ATCGCTCGGG
ATCAGCATCT ACCCCCACGA TGGTCGTGAC CTGGAAACCT TGCTCCGTAA TGCCGATACG
GCCATGTACC GGGCCAAGGA AATGGGCCGC AATGCCTTCC AGTTCTATTC GAGCGAGATG
AATACGACGA CGCTCGACCG CTTGCTGATG GAAAGCAATC TCCGGCGGGC GCTGGTCCAG
AACGAATTTA TCCTGCATTA CCAGCCGCTG GTGAATCTGG AAACCGGCCT GATCATTGGT
GTCGAGGCGT TGATCCGCTG GCTGCACCCG GAGCTAGGCT TGATCATGCC GGACCGCTTC
ATTCATGTGG CCGAAGAAAC CGGGCTGATC AATCCGATTG GTGATTGGGT GCTCTGCGAA
GCCTGTCGGC AGGCGAAGGC CTGGTGCGAT GCCGGGTTGC CCCCGATCTG CATGGCCGTC
AACGTGGCCC CGGTGCAATT CCGTCAGGCC GGCTTTGTCG AGATGGTGGC GGGCGCGCTG
GCGACATCCG GGCTGGATGC CAGCCGCCTT GAGCTTGAAT TGACCGAACG CACCGTGATG
CACGATGCGG ATATCAACAT GGGCACCTTG TCGGCCTTGC ACCGGATGGG GGTTGAGCTT
TCGCTTGATG ACTTTGGCAC CGGTTATTCA TCGCTGGCGT ATCTGAAGCG TTTTCCGGTC
GGTAAACTGA AGATCGACCG TTCCTTCGTC AACGACCTTG AAACCGACCC GGATGACTGG
GCGATTGCGT CGACCATCGT CAGCATGGGG CGCAGTCTGC GCATGACAGT GCTGGCCGAA
GGCGTAGAAA AAGTCGAACA ATTGGCGCTG TTGCGTAAAA TGGGGTGTGA CATGGCGCAG
GGCTACTATT TCAGTCGCCC GATGTCGGCG GATGGAATGG CCGATATGCT GCGTCTTCAA
CCATTCATCA ACAGGTAA
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| Protein sequence | MTRGVGEEII EQLFSDSKVG AAGSATAMTE QETMFRSTME AAQVGIFVLQ NQRFKYVNPF
LVGMFGYSAE ELLEQMGPLD LILPEQHAFV IEQMQLRAAG VLGHNYELTG LRKDGSTLPI
MVLGSPSVIG GLPASVGTVL DISAQKAAEQ RIRELADYDV LTGLPNRRLL RERFEQLLAA
AEREKSEIAV IFLDLDHFKR VNDSLGHSVG DELLCEVARR LDSVVRRIDT LARLGGDEFI
FAMPGFHTAA AVEVARRLVE VFSRPFEVAG HELTVTPSLG ISIYPHDGRD LETLLRNADT
AMYRAKEMGR NAFQFYSSEM NTTTLDRLLM ESNLRRALVQ NEFILHYQPL VNLETGLIIG
VEALIRWLHP ELGLIMPDRF IHVAEETGLI NPIGDWVLCE ACRQAKAWCD AGLPPICMAV
NVAPVQFRQA GFVEMVAGAL ATSGLDASRL ELELTERTVM HDADINMGTL SALHRMGVEL
SLDDFGTGYS SLAYLKRFPV GKLKIDRSFV NDLETDPDDW AIASTIVSMG RSLRMTVLAE
GVEKVEQLAL LRKMGCDMAQ GYYFSRPMSA DGMADMLRLQ PFINR
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