| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1028 |
|---|
| Symbol | |
|---|
| ID | 3568109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1127538 |
|---|
| End bp | 1129847 |
|---|
| Gene Length | 2310 bp |
|---|
| Protein Length | 769 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637679487 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_284254 |
|---|
| Protein GI | 71906667 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 0.952547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGAC AAGCCCCTCG TCGCAGCCTG CTGGCGATGG CTATTGCCAC CGCATTTGTG
CCGGCCTTTG CCGCCGAGAG CATCGTCCAG ACGGCCACGG TCGAAGTCAT CGGCAGCACG
CCCTTGTCCG GCATCGGCGT GCCGCGCCAG CAATTGCCGT CCAACGTCCA GTCGATCAGC
GACGATCAGC TCGAAGCGCT GGAGGCGCTC AATCTTCCAG AGTTCATGGT GCGCGCGCTG
CCGGCCGTGA CGGTCAATGA AATCCAGGGC AATCCGTATC AGGTCGACGT CAATTACCGT
GGCTTCACCG CCTCGCCGCT GCTGGGTACG CCGCAGGGGC TGTCGGTTTA CGTCGATGGC
GTGCGGGTCA ACGAAGCCTT TGGCGATACA GTGAATTGGG ATCTGCTGCC GCGTTCGGCC
ATTGCCGGCA TTGACCTGAT TCCCGGCTCC AATCCGGCTT TTGGCCTGAA TACGCTGGGC
GGGGCGCTCT CCATCCGGAC CAAGAATGGC TTCAGCGATG CCGGCAGCAA GCTCGAAATG
TCCGGTGGCA GCTTCGGGCG CAGCAATATC GAAGTCGAGC ATGGCGGCAA CAAGAACGGC
CTGGGCTGGT ATGCGGCCGG CGACTGGTTC CGCGAGGATG GCTGGCGCGA TTACTCGAAG
TCCGACGTCA AGCAGTTCTA CGGCAAGCTG TCGGCGCGCG GCGCCGCCGG CGAACTTGAT
CTGGCTTTGA CTCAGGCGCG GACCAGGCTG ATCGGCAACG GCCTGCTGCC GCTGTCGATG
CTGTCCGAGC GTCGCGACCA GATCTTCACC CACCCGGACA TCACCCGCAA CGACCTGACC
CAGCTGGCCC TGAACGGCAA GCTGTGGCTG AGCGACACGC AAAGCCTGAG CGCCAATCTA
TATCACCGCT ACACCCGGAC GCGGACGCTG AACGGCGACA TGAACGACGC GTACGAAAAC
GATTTTCTGC TCGATCCGAA CACGCCAAGT GGCGCCCACA ACCGCACCAG CACGCATCAG
AACACCACCG GTGCTGCGGT GCAGTGGAAC CTGAGCACCC AGCGCCAGCA ACTGGCTGTC
GGCAGCTCGA TTGACCAGGC CCGCATCCGC TTCCTGCAGA CCCGGCAACT CGGCCAGATC
GACGGCACGC GTGGTATCGA CCAGCTGGGC GATGTCACCG ACGAGAACAA ACTGCACGGC
TCGACCCGCA CGGCCAGCCT GTATGTCACC GATACCATCG CGTTGCGTTC CGACCTGCAC
TTGACCGCTT CGGCCCGCTA CAACGCGAGC CGGGTCCGGA CACACGACGA CCTCAATAGC
GCGCCGCCCA ATCTCGATGG CGACCACAGC TACACCAAGC TCAACCCGGC CTTCGGGCTG
GCCTGGCAGG TCGTCCCCGC GCTCAATGCC TACGCCGGCT TCAGCCAGGG CAACCGCGTA
CCGACGCCGA TCGAACTCGG CTGTGCCGAC CCGGCCAACC CGTGCACCCT GCCCAACTCG
ATGGCTTCCG ATCCCTATCT GAAACAGGTC GTCGCCCGCA CCGTCGAGGC CGGGCTGCGC
GGCCAGGTGG CAGGCGACAT CCAGTGGAAT GCCGGTGTCT ATCGCACGCT GAGCAGCGAC
GACATCCTGT TTGTCGGCAC CTCGACCAGC GCCGGTTACT TCACCAATTT CGGCAAGACG
CAGCGCCAGG GCGTGGAACT CGGCCTCAAC GGCAAGCTGC ACCGCGTCGA CTGGTATGCC
AACTACAGCT GGCTGCAGGC CAGCTTTCGT TCCGAAGCCT GCCTGCTCGG CGCCAACAAC
AGCACGCGCG GCACGGCGGC GGAATGCACC GGGGCCGGGC AGGACGACGA AATTCTGGTC
AAGAAGGGCA ATCGCCTGCC CGGCCTGCCC GAGCACAGCG CCAAGCTCGG CCTGAGCTGG
CGGGCCACCG ACTGGCTGCG GCTGGGCGGC GATGTGCAGG CCTTCTCCAG CCAGTACGTG
CGGGGCAACG AGAACAACCA GCACCAGAGC GGCACCTACA CCGACATCAA TGGCAACACC
CGGACCTTCG CTGGCTCGGG CAAGGTCGGC GGTTATGCGA TCCTGAATTT CAATGCCGAA
GCTCGTCTGG GTGGTGGCTG GCAGATCTTT GCCAAGATCA ATAACGTTTT CGACAAGCGC
TACGCCACGG CTGGCGCGCT GGCTGAAAAC CCGTTCGCCA GCGGCAGTTT TCAGGCAAAT
CCCGATGACT GGCATCGCGA AACCTTCGTC GCGCCCGGTG CGCCACGGGC TGGCTGGCTC
GGCCTGCGCT ACGTGTTTGG TGGAAAATGA
|
|---|
| Protein sequence | MKRQAPRRSL LAMAIATAFV PAFAAESIVQ TATVEVIGST PLSGIGVPRQ QLPSNVQSIS
DDQLEALEAL NLPEFMVRAL PAVTVNEIQG NPYQVDVNYR GFTASPLLGT PQGLSVYVDG
VRVNEAFGDT VNWDLLPRSA IAGIDLIPGS NPAFGLNTLG GALSIRTKNG FSDAGSKLEM
SGGSFGRSNI EVEHGGNKNG LGWYAAGDWF REDGWRDYSK SDVKQFYGKL SARGAAGELD
LALTQARTRL IGNGLLPLSM LSERRDQIFT HPDITRNDLT QLALNGKLWL SDTQSLSANL
YHRYTRTRTL NGDMNDAYEN DFLLDPNTPS GAHNRTSTHQ NTTGAAVQWN LSTQRQQLAV
GSSIDQARIR FLQTRQLGQI DGTRGIDQLG DVTDENKLHG STRTASLYVT DTIALRSDLH
LTASARYNAS RVRTHDDLNS APPNLDGDHS YTKLNPAFGL AWQVVPALNA YAGFSQGNRV
PTPIELGCAD PANPCTLPNS MASDPYLKQV VARTVEAGLR GQVAGDIQWN AGVYRTLSSD
DILFVGTSTS AGYFTNFGKT QRQGVELGLN GKLHRVDWYA NYSWLQASFR SEACLLGANN
STRGTAAECT GAGQDDEILV KKGNRLPGLP EHSAKLGLSW RATDWLRLGG DVQAFSSQYV
RGNENNQHQS GTYTDINGNT RTFAGSGKVG GYAILNFNAE ARLGGGWQIF AKINNVFDKR
YATAGALAEN PFASGSFQAN PDDWHRETFV APGAPRAGWL GLRYVFGGK
|
|---|
| |