| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0982 |
|---|
| Symbol | |
|---|
| ID | 3570297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1073887 |
|---|
| End bp | 1075350 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637679441 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_284208 |
|---|
| Protein GI | 71906621 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3259] Coenzyme F420-reducing hydrogenase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 72 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTACC AACTGGAAAC CGCCCAACAT CCCGAAACCC TGCGCCGTGT GGCGATCGAC
CCGGTATCCC GCGTCGAGGG CCACGGCAAG GTCACCATCC TGCTCGACGA CCAGAACAAG
GTGCATCAGG TTCGCCTGCA TATCGTCGAA TTCCGCGGCT TCGAGAAGTT CATTCAGGGC
CGGCCGTATT GGGAAGTGCC GGTCATGGTC CAGCGCCTGT GCGGCATCTG CCCGGTGTCG
CACCATCTGG CCGCTTCCAA GGCGCTCGAC ATCATCGTCG GCGCCAAGAA GTTGACGCCG
GCGGCCGAAA AGCTGCGCCG GCTGATGCAT TACGGCCAGA TGCTGCAGTC GCATGCCTTG
CACTTTTTTC ACCTGTGCTC GCCGGATTTG CTGTTCGGTT TCGATAGCGA TGTGACCAAG
CGCAACATCG TCGGCGTCGC CGCCGCGCAT CCGGAAACGG CCAAGCGCGG CGTGCTGCTG
CGCAAGTTCG GCCAGGAGGT GATCCGTGTC ACGGCGGGCA AGCGGGTGCA TGGCACCGGG
GCGGTGCCGG GCGGCGTCAA CAAGTCGCTG ACCATTGCCG AGCGCGACGA ACTGTTGAAG
GACATCTATC ACATCGTCCA GTGGTCGCGC GATGCGGTGC ATCTGATCCA GAAGGTGCAT
ACGCAAGACC CGGGGTTGTA CAACAGTTTC GGCATCTTCC GCTCCAATTT CATGTCCATC
GTCGGCCACA ACGGCGACCT CGACTTCTAT CACGGCACGC TGCGGGCGCG TGACGACAAC
GGCAAGATCA TCTTCGACGG TGTCGACTAC CAGCAGTACG ACAAGTACAT CGAGGAAGAA
GTACGGCCGT GGAGCTACAT GAAGTTCCCG TTCTTCAAAT CCATCGGCAA GGAACATGGC
TGGTACAAGG TCGGCCCGCT GGCCCGCGTG CAGAACTGCA ACCAGATCTC GACGCCGTTC
GCTGAGCACG AGCGCAAGGA ATTCGTCGAT TACGCCGGCG GCTCGCCGCT GCACGCTCCG
CTGGCTTATC ACTGGACGCG GATGATCGAG ATGCTGCACG CCGCCGAAGT GATCAAGGAA
CTGCTGCATG ACGACGACTT GCTGTCGGAT AACCTGATGG TCGAAGGCGA GCGCCAGATG
GAAGGCGTTG GCGTCATCGA GGCACCGCGC GGCACGCTGT TCCACCACTA TCGCGTCGAT
GAAAACGACC TGATCACGAT GGCTAACCTG ATCGTTTCGA CGACCAACAA CAACCAGGCG
ATGAACGAGG CCATCCGCCA CGTGGCACGG CGCTACCTGC ATGGGCGCGA AGTGACGGAA
GGCTTGCTCA ACCATATCGA GGTCGCCATC CGCGCCTTCG ATCCGTGCCT CTCCTGCGCA
ACGCATGCGC TCGGCAAGAT GCCGCTTGAA GTTGAGTTGG TCGATCCGGA CGGTCAGATT
GTCCATTCGC TGAGCCGCTC ATGA
|
|---|
| Protein sequence | MTYQLETAQH PETLRRVAID PVSRVEGHGK VTILLDDQNK VHQVRLHIVE FRGFEKFIQG
RPYWEVPVMV QRLCGICPVS HHLAASKALD IIVGAKKLTP AAEKLRRLMH YGQMLQSHAL
HFFHLCSPDL LFGFDSDVTK RNIVGVAAAH PETAKRGVLL RKFGQEVIRV TAGKRVHGTG
AVPGGVNKSL TIAERDELLK DIYHIVQWSR DAVHLIQKVH TQDPGLYNSF GIFRSNFMSI
VGHNGDLDFY HGTLRARDDN GKIIFDGVDY QQYDKYIEEE VRPWSYMKFP FFKSIGKEHG
WYKVGPLARV QNCNQISTPF AEHERKEFVD YAGGSPLHAP LAYHWTRMIE MLHAAEVIKE
LLHDDDLLSD NLMVEGERQM EGVGVIEAPR GTLFHHYRVD ENDLITMANL IVSTTNNNQA
MNEAIRHVAR RYLHGREVTE GLLNHIEVAI RAFDPCLSCA THALGKMPLE VELVDPDGQI
VHSLSRS
|
|---|
| |