| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0973 |
|---|
| Symbol | |
|---|
| ID | 3570288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 1062401 |
|---|
| End bp | 1065595 |
|---|
| Gene Length | 3195 bp |
|---|
| Protein Length | 1064 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637679432 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_284199 |
|---|
| Protein GI | 71906612 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCG ACTCGATATC TCGCGGCAAT CGGCTTTGGC TCGTCATTGG ACTGACGCTG
TTGCCGCTCT TCCTGTTGAC CGTCAAGGAC TACCTGAGCG AGCGCCAGAA AGCGCTCGAA
AAAATCGAAT TCGAGGCGCG CCTGACCCTC AAGGGCGCCG AATATGCCGA AGCAGCCAGC
GTTCGGGAAA TCGAAATCAT CCTGAAAGCG ATGGCCAACG CCGACAACAT GGCGAGCCTA
GAGCCTGCGG ACTGCGACGG CCTTGCCCGC CGGCTCAAAA GCGTACATGG CGACCTGCTC
AATCTGGGGG CGGCCACCCC GAACGGTGAC GTCTTCTGCA GCACCTCGCC AAGGACCAAT
GTCATCAGTG TCAAGGATCG GGCCTGGTTT GCCGAAGCAC AGCAAAAACC GGGAATCACG
CAAGGCCATT TCCAGGTTGG CCGAATTTCC GGCAAGCCGG GCATCACGTT TGGCTATTCT
GTGCCCGGCG CAGACGGTGC TCCACGCACC ATCCTGTTTG CTTCGACGAA AAATGGCTGG
TTCGACCGCT TCACCAATGT CGCCGCACTG CCCGCCGGTT GGTCCTCGCA AATCCGGACT
CGCGACGGAA CAACGATCTC GCGCTACCCC GATCCCGAAT TGGGGCGCGA CAAGGAATTG
AGCCCTGAAA GCCGGCAACG CTTTATCGAT GCCATTGCCG ATAAAAGAAC GACGGTCGTC
ATGCGCGGCG TCGACGACCT TGAACACATC TTCGTCATGG CGCCGCTGCA TGTCGCCAAC
GACGATCTGA TTCTGTCAGT CGGCATCCCC ACGGCGAGCT CGCTGGACCT GGTGGAGCAG
GAGTTCCGCC GCCGCCTGAT CGTTCTGCTG CTGATTTCAC TGGCCTCGGT CGGCCTCGCT
CGACTGTTCC TGCACGAAAT GCTCGATCGC AAATTTGGCG CAACGATCAA GGAATTAACC
CGACTGAAAA AGGCGCTCGA CAACGTTCCT GCCTACATCT ACCTGAAGGA TGCCGCACAC
CACTACCGCT ACGCCAATGC CAAAACCCTG AGCCTGTTCG GGACCGATGC CGAGTCGCTG
AAAGGCAAGG GCGACGAGCA TTTCTTCCCG CCGGAAACCG TTAGCCGACT TCGTCAGGTG
GACGCTCAGG TGCTGGCCGG CAAAAATACG GACGAAATCA TCACGATCAC CGATGAGCAT
GGTCAGCGCG CCATCTACCA CGAGATCAAA GCACCGCTCT GGGAGCTGGA CGAAAAGACG
CCGTGGGGCC TGTGTGGCAT CTCGATCGAC ATCACCCAGT ACCGGCTAGC CGAGGAGGCC
GTCGCCAGGC TGTCACGCGC CGTCGAACAA AGCCCGGAGA GTATCGTCTT CACCGACCTG
GAGGGCAACA TCGAGTATGT CAACGCCGCC TTTCTGGCGA TTACCGGCTA TTTGCGCGAG
GAAGTGATCG GCCGTAATCC GCGCATCCTG CAATCGGGCA ATACCCCCCG CGAACGTTAC
GACGAAATGT GGGCAACCCT GAAAGCAGGC AAGGTCTGGC GCGGCGAACT CATCAACAAG
CGCAAGGATG GCAGCGAATA TCTGGAACTG GCGACCATTT CGCCGATCCG CCAACCCGAC
GGAAAAATCA GCAATTACAT CGCGATCAAG GCCGACATCA CCGAGCAGCG GAAAAACCAG
GAGGAGTTGG AGAAATACCG CACCGGCCTC GAAAGGCTGG TGCAACAGCG CACGCAGGAA
CTGGCCGTGG CCAAGGAAGC GGCGGAAGTG GCCAGCCGTG CCAAGAGTAC TTTCCTGGCC
AACATGAGCC ATGAAATCCG CACCCCGATG AATGCCATCA TGGGGCTTGG TTATCTGCTC
GAACAATCCC CCCTGAATAC CGAACAGCAG GACAAGGTGC GGAAGATCCA TGGCGCCGCG
AAACATCTGC TGAGCATCCT TAACGATGTG CTCGACCTGT CGAAGATCGA GGCCGGCAAG
ATGACGTTGG ATCGCTGTGC CTACAGCCCG GCCGAGGAGT TGACGGCAGT GGCCAGCATG
ATCGGCGAGG ATGCTCAGCG CAAGGGACTG ACCGTCATCA CCGAGACGGA CGATCTGCCC
CCCTTCACCA TCGGCGATCC GACCCGTTTG CGCCAGGCCA TACTCAATTT TGCCGGCAAT
GCCGTCAAAT TCACCGAACA CGGCAGCATC CGGCTACGCG GTGAGATCGC GGAAACGCAG
CCCGACAACT ACCTGCTGCG ATTTTCCGTC TCCGACACCG GCCCCGGCAT TGCGCCTGAA
CTGCAGGCCC GACTGTTCAC CGCCTTCGAA CAGGCCGACA GCAGCTCGAC CCGGCGCCTG
GGCGGCACAG GCCTGGGGTT GGCCATTTCC CGTCATTTGT CACACCTGAT GGGGGGCGAT
GCCGGCGTCG ACAGCACCCT TGGGCAAGGC AGCACCTTCT GGCTGACCGT CCGCGTCGAC
AAGACGACCG AAACCCGTAG CCCGGTGAAC GCGACGGATA ACGACGGCGA ATCCTTGCGC
CACGAACCGC CGTGGCGCGT CCTCGTGGTC GAGGATAGCG AGATCAACCG TGAGATCGTG
GCCGAGATTC TGATGGAAGT CGGCATTGTG GTCGACACCG CCGAGGATGG CGTCAAGGCC
GTTGAAAAAG CCGCGCAAAC CCACTACAAC CTGATCCTGA TGGATATCCA GATGCCCAAT
ATGGACGGTC TGGAAGCGAC GCGCCAAATT CGCCGGCATG CCGTCAATCC CAATATACCG
ATCATCGCGC TGACCGCCAA CGCGTTCGAT TCAACGCGGC GAGAAACCCG ACTTGCCGGC
ATGAACGATT TTGTCACCAA GCCGATGGAG CCGGCCACGC TCTACACCGC CCTGCTCCGC
TGGCTGCCGG CAGCCCGAAC GCCTCAAGCA GCGGCCATCC CCGAGCAGGC GCTCAGCGAT
GCCGAGTTGA CCGCGCAATT GCACACATTG ACCGAGGCGC TCAGCACCGG AGATATCGCT
GCCAATCATC GCTACCAGGT ACTGCACCCC AACATTCGCC GACAAATGGC CAACAATGAC
CTGATCGAAC TCGACCTGGC CATGGCGCGC TATGCTTATG ACGATGCTCT GGCCATCCTT
GAGCGCTGGC GTCACAATGC GCCGCCACCC CGTCCCGATA GCGAGACGAG GCAGGACGAG
GCCACACACG AGTGA
|
|---|
| Protein sequence | MKFDSISRGN RLWLVIGLTL LPLFLLTVKD YLSERQKALE KIEFEARLTL KGAEYAEAAS
VREIEIILKA MANADNMASL EPADCDGLAR RLKSVHGDLL NLGAATPNGD VFCSTSPRTN
VISVKDRAWF AEAQQKPGIT QGHFQVGRIS GKPGITFGYS VPGADGAPRT ILFASTKNGW
FDRFTNVAAL PAGWSSQIRT RDGTTISRYP DPELGRDKEL SPESRQRFID AIADKRTTVV
MRGVDDLEHI FVMAPLHVAN DDLILSVGIP TASSLDLVEQ EFRRRLIVLL LISLASVGLA
RLFLHEMLDR KFGATIKELT RLKKALDNVP AYIYLKDAAH HYRYANAKTL SLFGTDAESL
KGKGDEHFFP PETVSRLRQV DAQVLAGKNT DEIITITDEH GQRAIYHEIK APLWELDEKT
PWGLCGISID ITQYRLAEEA VARLSRAVEQ SPESIVFTDL EGNIEYVNAA FLAITGYLRE
EVIGRNPRIL QSGNTPRERY DEMWATLKAG KVWRGELINK RKDGSEYLEL ATISPIRQPD
GKISNYIAIK ADITEQRKNQ EELEKYRTGL ERLVQQRTQE LAVAKEAAEV ASRAKSTFLA
NMSHEIRTPM NAIMGLGYLL EQSPLNTEQQ DKVRKIHGAA KHLLSILNDV LDLSKIEAGK
MTLDRCAYSP AEELTAVASM IGEDAQRKGL TVITETDDLP PFTIGDPTRL RQAILNFAGN
AVKFTEHGSI RLRGEIAETQ PDNYLLRFSV SDTGPGIAPE LQARLFTAFE QADSSSTRRL
GGTGLGLAIS RHLSHLMGGD AGVDSTLGQG STFWLTVRVD KTTETRSPVN ATDNDGESLR
HEPPWRVLVV EDSEINREIV AEILMEVGIV VDTAEDGVKA VEKAAQTHYN LILMDIQMPN
MDGLEATRQI RRHAVNPNIP IIALTANAFD STRRETRLAG MNDFVTKPME PATLYTALLR
WLPAARTPQA AAIPEQALSD AELTAQLHTL TEALSTGDIA ANHRYQVLHP NIRRQMANND
LIELDLAMAR YAYDDALAIL ERWRHNAPPP RPDSETRQDE ATHE
|
|---|
| |