Gene Daro_0972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_0972 
Symbol 
ID3570287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp1059402 
End bp1062386 
Gene Length2985 bp 
Protein Length994 aa 
Translation table11 
GC content62% 
IMG OID637679431 
Productresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_284198 
Protein GI71906611 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.172335 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATCCAG ACCAAAATTC CATCTACCCT GATCATCGGC TGCTCGGTCC CAACGGCGAC 
AAGCCGCTGA TCCTCGTCGT CGACGACACG CCGATCAATC TGGAAACATT GGCCGAGATG
GTGCGCCATG CCGGCGCCAA CGCCCGGGTC GCCAACTGCG GCGCGACCGC CTTGCGTTAC
GCGCGCCTCG AACCGCGCCC CGACCTCATT CTGCTCGATA TCATGATGCC GGACATGGAT
GGCCATGCTG TCCTCGCCGA ATTGCGCCGA ATGCCGGAGA CCCGGGATAT TCCGGTCATT
TTCGTCACCG CGCTCGATGA CCAGTCCGAG GAGGAACGGG GTATCCGTGA AGGCGCGGCC
GACTACGTCA GCAAGCCGGT CAAGATGTCG GTGCTGATTG CCCGCATCCG GGCGCATCTG
GAAGTGCGCC GGGCGCAATG GCTGCTCGCC AACCAGAAAG CCTGGCTGGA ACAGGAAGTG
GAGCGGCGCA TTGCCGAAAA CACGCAACTG GATCGCCACC TGACCCTGGC CCTGGAGCGC
AGCGGCTTCG GCATCTGGGA ACACGACCCT GTGCGCAACC GTAACCGCTG GAGCGAAGGT
CTGCGTCAGA TGCTCGGCTA TGAGCAGGAA CCCGAACAGC TGGCCGAGTC CATGAACCTG
ATCCATCCCG AGGATCGCCC GGCAGTGGAG GCGCAAGTCA CCGCCAGTCT GCGGGATCGC
AACAGCATCC TGATCGGCGA ATTCCGTATT CGTCATCACG ATGGCGGCTG GCGCTGGGTC
GAATCCCGCG GCCGCATCGT CGAATTCGAT GAGGCCGGCC AGCCGACCCT GATGATCGGC
ACGATGCTCG ACATTACCGA ACGCAAACTC GCCGAAGCCG AGCATCGCCT GGCCGACCTG
GTGTTTACCG GTATCGGCGA GGGAATCTGC ATCACCGATG CCAAGCGCAA CATCCTTCGT
ATCAACGATG CCTTTTCCAC GATCACCGGC TACCAGGCCG ACGAGATCGT TGGCCAAAAT
CCGCGCCTGC TCAAATCCGG GGTGCATAGC CCGGCTTTCT ATGCCGAGAT CTGGAAAACC
ATCGATCAAT ACGGCAACTG GCAGGGCGAA ATCACCAACC GCCACAAGGA TGGCTCGCTG
GTCACCGAAT GGCTGTCCAT CAGCAGCCTG CGTGATACGA CAGGCACAGC ATCCCACTAC
ATCGGCATTT TCAGCGACCT GTCTGAACGA CAGGCTGCCG CCGAACGCAT CCAGTATCTG
TCGAGTTACG ACACCCTGAC CGAACTGCCC AACCGGCACC TGTTCGATGA CCGCCTGAAC
CAGGCCCTGC TGACGGCACG CCGCTTCGAG CGGGGTACGG CACTGATCCT GCTCGACCTG
AACCGTTTCC GGCTGATCAA CGATACCCTG GGCCCTCCGG CCGGCGACGA AATACTGGTC
GAAGTCACCC GCCGCCTGAA GTTGCAGGTG CGCGAAGGTG ACACCGTCGG TCGCCGGGCC
GGCAACGAAT TCGGTTTCGT GATGGCCAAC CTGAGCCACG AGCGGGATGC GCTGGCCCTG
GCCCAGCGCA TGCTCGATGC CATCTCGGTG CCATTTTCGG TCGCAGGCCA GTCGGTGGCG
ATCACTGCCA GCATCGGCAT CAGTGTCTTT CCCAAAAATG GTGAAAACGG CGAGGCGATG
CTCAGGTCTG CCGATGCTGC CTTGCTGCGC GCCAAGCAGT CCGGGCGCAA CACCTTCAGC
TTCTATTCGC CGGAGATGGA CGCCGATGCG GCGCGCCGCC TGTCCATCGA AAGCGCCTTG
CGCGACGCGC TGGCCCGCGA CGAGTTCTGC GTGCATTACC AGCCGCAGGT CAGTCTCGAC
AGCGGCCACA TGATCGGCAT GGAAGCACTG CTGCGCTGGA ACTCGGCCCT GCTCGGCCCT
ATCTCTCCGG TTGAATTCAT TCCCATTGCC GAGGAAACCG GGCTGATCAT GCAGATCGGC
GACTGGGTGC TACGTACGGC CTGTCACCAA ACCAAAGCCT GGCTCGATCT CGGATTGCTG
CCTTTACACG TCGCCGTCAA CCTGTCGCCC CGCCAATTCC GTCAGGCCGA CCTGCCGGCC
CAGGTCGCCC ATGCCCTGGC CGAAAGCGGC CTGCCGGCCG GGGCACTGGA ACTCGAAATC
ACCGAAAGCG CCTTCATCGA CGACATCGAC GATGCCGTCG CCATGTGCAG CAAGCTCAAG
TCCCTGGGCA TCAAACTCTC GCTCGACGAT TTCGGCACTG GCTATTCGTC GCTGGCCTAC
GTATCGCGCT TCCCCTTCGA CAAGATCAAG ATCGACCAGA GCTTCGTTCG CGACATCGTC
AACAATCCGG TCAATGCGGC CATCGCCTCG GCCGCCATCG TCATGGGCCG CAGTCTCAAC
CTGTCGGTGC TGGCCGAGGG GGTCGAAACC GAGGCTCAGG CCGCCTTTTT GCGCAGCCGG
CGGTGCGATG CCATCCAGGG CTACCTGTTC AGCCGCCCCC TGCCGCCGGA GGAGTTCGCT
CCCCTGTTGC TCAGCTGCAA GCCCTTGCCA ATCGCGGCGC TTAGCCCGGC ACAGGAGCAA
ACCCTGCTAC TGGTCGATGA CGAGCCGAAT GTGCTGAGTT CGCTAACCCG CCTGCTGCGG
CGCGAAGGCT ATGCCATTCT CACGGCCACT TCGCCGACCG AAGCCTTCGA CCTGCTGGCC
AAGCAGCCGG TACAGGTGGT TATTTCGGAT CAGCGCATGC CGGACATGTC AGGCACCGAA
TTCCTCTCCC GCGTCCGCCA GCTCTACCCG GCCACCATCC GCCTGGTGCT GACCGGCTAC
ACCGATCTCC AGTCGGTCAC CGATGCGATC AACCGCGGCG CCATCTACAA GTTCCTGACC
AAGCCATGGG ATGACGACCA ACTGCGCGAG CAGATCCGCG AGGCCTTCCG CGTGGTGCAT
TTGAATCAGG AACAGAACTT CATACCTGCC TCCCGTGAAT CCTAG
 
Protein sequence
MNPDQNSIYP DHRLLGPNGD KPLILVVDDT PINLETLAEM VRHAGANARV ANCGATALRY 
ARLEPRPDLI LLDIMMPDMD GHAVLAELRR MPETRDIPVI FVTALDDQSE EERGIREGAA
DYVSKPVKMS VLIARIRAHL EVRRAQWLLA NQKAWLEQEV ERRIAENTQL DRHLTLALER
SGFGIWEHDP VRNRNRWSEG LRQMLGYEQE PEQLAESMNL IHPEDRPAVE AQVTASLRDR
NSILIGEFRI RHHDGGWRWV ESRGRIVEFD EAGQPTLMIG TMLDITERKL AEAEHRLADL
VFTGIGEGIC ITDAKRNILR INDAFSTITG YQADEIVGQN PRLLKSGVHS PAFYAEIWKT
IDQYGNWQGE ITNRHKDGSL VTEWLSISSL RDTTGTASHY IGIFSDLSER QAAAERIQYL
SSYDTLTELP NRHLFDDRLN QALLTARRFE RGTALILLDL NRFRLINDTL GPPAGDEILV
EVTRRLKLQV REGDTVGRRA GNEFGFVMAN LSHERDALAL AQRMLDAISV PFSVAGQSVA
ITASIGISVF PKNGENGEAM LRSADAALLR AKQSGRNTFS FYSPEMDADA ARRLSIESAL
RDALARDEFC VHYQPQVSLD SGHMIGMEAL LRWNSALLGP ISPVEFIPIA EETGLIMQIG
DWVLRTACHQ TKAWLDLGLL PLHVAVNLSP RQFRQADLPA QVAHALAESG LPAGALELEI
TESAFIDDID DAVAMCSKLK SLGIKLSLDD FGTGYSSLAY VSRFPFDKIK IDQSFVRDIV
NNPVNAAIAS AAIVMGRSLN LSVLAEGVET EAQAAFLRSR RCDAIQGYLF SRPLPPEEFA
PLLLSCKPLP IAALSPAQEQ TLLLVDDEPN VLSSLTRLLR REGYAILTAT SPTEAFDLLA
KQPVQVVISD QRMPDMSGTE FLSRVRQLYP ATIRLVLTGY TDLQSVTDAI NRGAIYKFLT
KPWDDDQLRE QIREAFRVVH LNQEQNFIPA SRES