| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0893 |
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| Symbol | |
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| ID | 3569995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 965404 |
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| End bp | 967161 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637679351 |
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| Product | type II and III secretion system secretin |
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| Protein accession | YP_284119 |
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| Protein GI | 71906532 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA TTTCGATAGT CGCTATGTCG GCACTTTTGC TGGCCGCGTG CAGCAACCAG
TATTCGCATC GGGGAGATGC GTTCGAACGG GCCGGTCAGG AAATCGGTGC CGCCGCTGCC
GGCAAGACGA ACCGCTCGCA AGGCGATGTC GTCGGCCAGG CCATGGTGCC ACCACTGCAA
CTGGAGCAGC CGGTTGCTGC CAAGCCGGAG CCTCGTTTCA ATCTGGCGGT CAATAATGCC
CCGGTTGGAC AGGTACTGAA TGCCCTGGTT TCCGGTACGC CTTACAGCAT GCTTTTCCCG
CCCGAACTGT CGGGCACGGT CAGCCTGAAT CTGAAGAACA CGACGGTGCG CGAGGCGCTC
GATACCCTGC GCGATGTCTA TGGTTACGAT TACCGTTTCC AGGGCAACCG GATTTACGTG
CAGCCCAATA CCATCCAGAC CCGGATATTC AAGATCAATT ATCTGGCGAG TCGTCGGCAG
GGCATGAGCG ACATGCGGGT GACCGGCAGC TCACCGACAA CCTCGAACCC CGGCATGGGC
AGCGGGGCAG CTTCCGGGCA GCAGCTAAGT GGCAGTGCCT CGGGGACGAC GGGCGGAACG
ACCAGCTCGT CGGCACAGCG CATCGTCGAC AGCGCCCGTG TCCAGACGAG TTCGGATTTT
GATTTCTGGA AAGATCTGAC CTTGGCACTG ACGACGATTG TCGGTCACCA GGACGGCCGC
AATGTGATCG TCAATCCAGG CTCCGGGGTC GTGCTGGTCA AAGCAACGCC AGTCGAGCTG
CGGGGGGTCG ACGAATATCT GAAGGCGACC CAGCTGGTGG TCGAGCGACA GGTAATGCTG
GAGGCGAAGA TCATCGAGGT CTCGCTGAAC GACTCGTACC AGACCGGCAT CAACTGGAGC
AAGTTCGGTG GCATCGCCAA TCGCTTCTCT CTCGGGATCG CTGCCCCGAG TGCGACCCTG
GCCGGCTCCG GGGTGATCAG CGGTTCTGCC GCCGGTGTTT CCGGCGGCAC TGCGGTGGCT
GCTGTACCGG GCAGTGGCGG CGCCATGGCT ACGGGGCCGA CGGGGCGTGG TTTCTTCGGC
CTGACCTTCC AGTCCAATAA TTTTGCGGCG CTGCTTTCCT TCCTCGAGGG GCAGGGTGAC
GTTCAGGTGC TGTCCAGCCC GCGTATTGCG ACGACCAATA ACCAGAAGGC CGTGCTCAAG
GTGGGGACGG ACGATTACTT CGTGACCGGG ATTAGCACCA ATGTGACGAC CGGCACCGGT
ACCGGCGGCA ATGTCGTGAC TCCGAATATC ACCCTGCAAC CATTTTTCTC CGGTATCTCG
CTCGATGTGA CGCCGCAGAT CGACGATGAG GGCAACATCA TCCTGCACGT GCATCCGTCT
GTCAGCGTGG TCGAGGAAAA GAGCAAGAGC GTCAATCTTG GCGACCTCGG AACCTACACG
CTGCCGCTGG CATCGAGCAC GATCAACGAG AGCGACAGCA TCGTCCGCGT CCAGGACGGC
AGTATTGTCG CCATCGGCGG ACTGATGAGC CAGGAACAGA ATACCAACCG CTACGGTCTG
CCGGGGATCA GCGGCGTGCC CGGGCTTGGT CTGTTGTTCG GTCAGAAGAG TGTTTCCAAT
CGCAAGCGCG AATTGGTCAT CCTGATGAAA TCGACAGTCA TTCGGGGCGA GAATTCCTGG
CGCGATGTGG CCGGCGATGC CCAGGACCGT CTGCAGGCGC TCGACCCGCG GCAGCAACGC
CACATCGAGT GGCAATGA
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| Protein sequence | MSKISIVAMS ALLLAACSNQ YSHRGDAFER AGQEIGAAAA GKTNRSQGDV VGQAMVPPLQ
LEQPVAAKPE PRFNLAVNNA PVGQVLNALV SGTPYSMLFP PELSGTVSLN LKNTTVREAL
DTLRDVYGYD YRFQGNRIYV QPNTIQTRIF KINYLASRRQ GMSDMRVTGS SPTTSNPGMG
SGAASGQQLS GSASGTTGGT TSSSAQRIVD SARVQTSSDF DFWKDLTLAL TTIVGHQDGR
NVIVNPGSGV VLVKATPVEL RGVDEYLKAT QLVVERQVML EAKIIEVSLN DSYQTGINWS
KFGGIANRFS LGIAAPSATL AGSGVISGSA AGVSGGTAVA AVPGSGGAMA TGPTGRGFFG
LTFQSNNFAA LLSFLEGQGD VQVLSSPRIA TTNNQKAVLK VGTDDYFVTG ISTNVTTGTG
TGGNVVTPNI TLQPFFSGIS LDVTPQIDDE GNIILHVHPS VSVVEEKSKS VNLGDLGTYT
LPLASSTINE SDSIVRVQDG SIVAIGGLMS QEQNTNRYGL PGISGVPGLG LLFGQKSVSN
RKRELVILMK STVIRGENSW RDVAGDAQDR LQALDPRQQR HIEWQ
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