| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0879 |
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| Symbol | |
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| ID | 3569942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 952232 |
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| End bp | 953941 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637679337 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_284105 |
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| Protein GI | 71906518 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 54 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.13472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCCCC CGCAAAAAGT CCGCCTTGGA GACCTGCTGA TCGAGCAAGG TCTGCTGACT
GACGAACAAT TGAAAATCGC GCTCGATGAA CAGAAACGCA CAGGGCGCAA GCTGGGGCGC
GTTTTTGTCG AGAGTGGCTA CGTTACCGAG GAAGGGATCT CGCAGGCGCT GGCTCGTCAG
CTGCGGATTC CCTTCGTCAA TCTCAACAGC TTCACACCCA AGCCGGACCT GATCAAGCTG
TTGCCTGAGG CGCCAGCCCG ACGCTTCCGG GCGCTGGTGC TTGATCAGTT GCCGGATGGA
CGCCTGCAGA TAGGGCTGGC CGATCCAACC GATTTGCAGG CCTATGACGA AATTACCCGT
CTGGTTCGGC GAGAGATTGA TCTCGCAGTC GTTACTGAAA GCCAGTTGCT GGCGATGGTC
GACCGCGTTT ATCACCGTGG CGAACAGATT ACCGGCCTTG CCAAGGAGCT GACTGCCGAG
CTGGGCGATG TGCCGATCGA GTTCGGTGAC CTGCTTGGCT TGAACCCCGG TGCCGAAGAT
GCGCCCGTCG TCAAGCTGCT GCAGACGGTG TTCGAGGAGG CCATGCGCCT GCGCGCTTCC
GACATCCATT TCGAACCGCA GGAAAAATCA CTGCGCATCC GCTTCCGGAT CGACGGTGTG
CTGCATATCC AGACCGAGGC CGACGCCAAA GTCTCATCGG CCGTCGCGCT GCGCCTGAAA
CTGATGTCCG GGCTGGATAT TTCCGAAAAG CGCCTGCCGC AGGATGGTCG ATTCAACATC
AAGGTGCGCG CCAATCCCGT TGACGTGCGT ATTTCCACCC TGCCGACCCA ATTCGGCGAG
TCGGTCGTCA TGCGTCTGCT CAACCAGAAC ACCGGCCTGC TTGAGCTTGA GAAGATCGGC
ATGCCAGAAC GCGTTCTGGA GCGCTTCCGC CACGCCCTGA AGCGGCCGAG CGGCATGGTT
CTGGTGACAG GCCCGACAGG TTCCGGCAAG ACGACGACGC TTTATGCTGC GCTGAACGAA
CTGAACAGCC CGGAAAAGAA GGTCATTACC GTCGAAGATC CGGTCGAATA CAGGCTTCCT
GGCTTGAATC AGGTGCAGGT GCACGAAAAG ATCGACCTTT CCTTCTCGCG CGTGCTGCGC
ACCGTGCTGC GTCAGGATCC GGATATCGTG CTGATCGGCG AAATGCGCGA CCAGGAAACG
GCCGAAATCG GTATGCGGGC CGCCATGACC GGCCACCTCG TGCTGTCGAC CTTGCACACC
AACGATGCCA TGTCGACGCC AATCCGCCTG CTCGACATGG GGGTGCCACG CTACATGGTG
GCGCTGTCGG TGCATATGGT CGTTGCCCAG CGGCTGGTTC GGGTCATCTG CGGCAATTGT
CGCGAGGCCT ATGTGCCAAC GCCAAACGAG CACGAATGGC TACGTTACGA GTTGGGCAGT
CAGATCGATA GCCATGTCTT CCATCATGGT CGCGGCTGTG CGCACTGTGC CAACACGGGC
TATCAGGGCC GGACGGGCGT CTATGAGTTT CTTGAAATGA GTGATCCGGT GGTTGAAGCG
ATCAACCATG AGGACCCGGG TGAATTCCTG CGTGTCGCCC GGCAGCAGAT GGCCGGCGAG
ACCCTGCGTC GCGATGCGGT CCGCCTGGTC CTGGCCGGAA CGACCAGTGT GGCCGAAGCC
ATGCGCATCA GTAACCAGTT CGAGGAATAG
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| Protein sequence | MPPPQKVRLG DLLIEQGLLT DEQLKIALDE QKRTGRKLGR VFVESGYVTE EGISQALARQ
LRIPFVNLNS FTPKPDLIKL LPEAPARRFR ALVLDQLPDG RLQIGLADPT DLQAYDEITR
LVRREIDLAV VTESQLLAMV DRVYHRGEQI TGLAKELTAE LGDVPIEFGD LLGLNPGAED
APVVKLLQTV FEEAMRLRAS DIHFEPQEKS LRIRFRIDGV LHIQTEADAK VSSAVALRLK
LMSGLDISEK RLPQDGRFNI KVRANPVDVR ISTLPTQFGE SVVMRLLNQN TGLLELEKIG
MPERVLERFR HALKRPSGMV LVTGPTGSGK TTTLYAALNE LNSPEKKVIT VEDPVEYRLP
GLNQVQVHEK IDLSFSRVLR TVLRQDPDIV LIGEMRDQET AEIGMRAAMT GHLVLSTLHT
NDAMSTPIRL LDMGVPRYMV ALSVHMVVAQ RLVRVICGNC REAYVPTPNE HEWLRYELGS
QIDSHVFHHG RGCAHCANTG YQGRTGVYEF LEMSDPVVEA INHEDPGEFL RVARQQMAGE
TLRRDAVRLV LAGTTSVAEA MRISNQFEE
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