Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0526 |
Symbol | |
ID | 3567356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 586121 |
End bp | 588094 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637678969 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_283753 |
Protein GI | 71906166 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 61 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAAGG CAAAAGACAC CGCTAAGGAA GCCCCGAAGG CTCGCACCAG CAAGGCCAAG GATAAAGCCG CCGAAAAGGC GCTGCTCCAG GGCCAGATGG CTGAGACGCC GGAACCGCTT GACGCCGAAG CGCGCAAAAT GCGCCTCAAG GCCCTGATCA AGCTGGGCAA GGAACGCGGC TACCTGACTT ACGCCGAAAT CAACGATCAC CTGCCGGATG ACGTCGTCGA TGCCGAAAGT ATCGAAGCGA TCATCTCGAC TTTCAGCGAA ATGAGCATCC AGGTCTTCGA CGAAGCCCCG GCTGCAGAAG ACCTGCTGAT GTCCGACACT GCTGCGGTTG CCGCCGACGA CGAGGAAGTC GAAGCGCAGG CCGAGCAGGC CCTGTCCACT GTCGACTCCG AATTCGGCCG CACCACCGAC CCGGTCCGCA TGTACATGCG TGAAATGGGC TCGGTCGAAC TCCTCACCCG CGAAGGCGAA ATCGAGATCG CCAAGCGAAT CGAGGAAGGC CTGAAGCACA TGATCCAGGC GATTGCCGCC TGCCCGACGA CGATTTCCGA CATTCTCGAA TTGGCCGCCA AGGTCGAATC CGATGAAATG CGCATCGACG AACTGGTCGA CGGCCTGATC GACCCGAACG CTGTCGAAGA AGCCCCGGCG GCCGAAATGC CGGAAGCCGA AGAAGACGAA GAAGAAGACG GCGATGACGA CGGCGAGGGT GCTGGCGGCG GCGCCGCTGC GGCCTCCCTG CTGCAACTGA AGACCGATGC CTTGGAGCGC TTCAAGAACA TCAAGGGCAT CCACGCCAAG ATGCAGAAGA TGCTCCCGAC CAAGGGTTCG CACGACAAGG TGTACATCAA GCTGCTGCAA CAGGTTTCCG ACGAACTGAT GAACATCCGC TTCACCTCGC GTTCGATCGA GCGCCTGTGC GATAGCGTGC GCGGCATGGT CGAGCAGGTT CGCGGTTGCG AGCGCAAGAT CCAGCAAATC TGCGTGGACC GCGTCAAGAT GCCGCGCCCG CACTTCATCC AGTCCTTCCC GGGCAATGAA ATCAACCTCG ACTGGGCCGA TGCCGAAGTC GCTGCCGCCC CCAAGACCTA CGTTGCCATC CTGACCCGCA ACGCGCCGGA CATCAAGGAA GAGCAGAAGA AACTGCTCGC CCTGCAGGAC CGTATCGGCA TTCCGCTCAA GGACCTGAAA GACATCAACA AGCAGATGTC CACCGGCGAA GCCAAGGCCC GCCGCGCCAA GCGCGAAATG ACCGAAGCCA ACCTGCGTCT GGTCATCTCG ATCGCCAAGA AATACACCAA CCGCGGCCTG CAGTTCCTCG ACCTGATCCA GGAAGGCAAT ATCGGCCTGA TGAAGGCGGT GGACAAGTTC GAATACCGCC GCGGCTACAA GTTCTCCACC TACGCCACAT GGTGGATCCG CCAGGCCATC ACCCGCTCCA TCGCCGACCA GGCACGGACC ATCCGTATCC CCGTGCACAT GATCGAAACG ATCAACAAGA TGAACCGGAT CAGCCGCCAG ATCCTGCAGG AAACGGGTGC CGAACCCGAT CCGGCGACGC TAGCCAAGAA GATGGACATG CCGGAAGACA AGATTCGCAA GATCATGAAG ATTTCCAAGG AGCCAATCTC CATGGAAACC CCGATCGGCG ACGACGACGA CTCGCACCTC GGCGACTTCA TCGAAGACTC AGGCACCCTG GCCCCGGCCG ATGCCGCGAT GTATTCCAGC CTGCGCGGCG TCACCAAGGA AATCCTCGAC ACGCTGACGA CGAGGGAAGC CAAGGTACTG CGCATGCGCT TCGGCATCGA AATGAACACC GATCACACGC TGGAAGAAGT CGGCAAGCAA TTCGACGTCA CCCGCGAACG TATCCGTCAG ATAGAAGCCA AAGCCCTGCG CAAGCTGCGT CACCCGACCC GCTCCGACAA GCTGCGCAGT TTCGTCGACA CGAACAACAG TTAA
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Protein sequence | MAKAKDTAKE APKARTSKAK DKAAEKALLQ GQMAETPEPL DAEARKMRLK ALIKLGKERG YLTYAEINDH LPDDVVDAES IEAIISTFSE MSIQVFDEAP AAEDLLMSDT AAVAADDEEV EAQAEQALST VDSEFGRTTD PVRMYMREMG SVELLTREGE IEIAKRIEEG LKHMIQAIAA CPTTISDILE LAAKVESDEM RIDELVDGLI DPNAVEEAPA AEMPEAEEDE EEDGDDDGEG AGGGAAAASL LQLKTDALER FKNIKGIHAK MQKMLPTKGS HDKVYIKLLQ QVSDELMNIR FTSRSIERLC DSVRGMVEQV RGCERKIQQI CVDRVKMPRP HFIQSFPGNE INLDWADAEV AAAPKTYVAI LTRNAPDIKE EQKKLLALQD RIGIPLKDLK DINKQMSTGE AKARRAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ ILQETGAEPD PATLAKKMDM PEDKIRKIMK ISKEPISMET PIGDDDDSHL GDFIEDSGTL APADAAMYSS LRGVTKEILD TLTTREAKVL RMRFGIEMNT DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR HPTRSDKLRS FVDTNNS
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