| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0331 |
|---|
| Symbol | rplE |
|---|
| ID | 3567077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 371537 |
|---|
| End bp | 372076 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637678773 |
|---|
| Product | 50S ribosomal protein L5 |
|---|
| Protein accession | YP_283560 |
|---|
| Protein GI | 71905973 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0094] Ribosomal protein L5 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 2.86209e-22 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000514338 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGTT TGCAACAGTT TTACAAAGAA ACGATTGTTT CCGATCTGGT TAAGCAGTTT
GGTTACAAAT CCGTGATGGA AGTTCCGCGT ATCACCAAGA TCACCTTGAA CATGGGTGTT
GGCGAGGCGG TAGCTGATAA GAAAGTTCTG GAAAACGCCG TTGGCGACAT GCAGAAGATT
GCAGGTCAAA AGCCGGTTAC CACGAAAGCC CGCAAGTCCA TTGCCGGCTT CAAGATTCGT
GATGGTTATC CGATCGGTTG CATGGTCACC CTGCGTGGTC CTCGCATGTT CGAATTCCTT
GATCGTCTGG TGACCATCGC TTTGCCGCGC GTTCGCGACT TCCGTGGTAT TTCTGGCAAG
GGTTTTGACG GCCAGGGCAA CTACAACATG GGCGTCAAAG AACAGATTAT TTTCCCGGAA
ATCGAGTACG ACAAGATCGA TGCTCTGCGG GGTATGAACA TCAGTATCAC CACGACCGCG
AAGACCGATG CAGAAGCTAA AGCTCTGCTG GTGGCCTTCA AGTTCCCGTT CAAGAATTGA
|
|---|
| Protein sequence | MARLQQFYKE TIVSDLVKQF GYKSVMEVPR ITKITLNMGV GEAVADKKVL ENAVGDMQKI
AGQKPVTTKA RKSIAGFKIR DGYPIGCMVT LRGPRMFEFL DRLVTIALPR VRDFRGISGK
GFDGQGNYNM GVKEQIIFPE IEYDKIDALR GMNISITTTA KTDAEAKALL VAFKFPFKN
|
|---|
| |