Gene Daro_0214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_0214 
Symbol 
ID3569909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp229610 
End bp231757 
Gene Length2148 bp 
Protein Length715 aa 
Translation table11 
GC content50% 
IMG OID637678652 
Producttype II and III secretion system secretin 
Protein accessionYP_283443 
Protein GI71905856 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.00866012 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTTA TTAACTATGC GATGGCTGCT GCCTTAACCT GCCTTGCTGT AGTGTCTTCT 
GCTCGCGCGG AAACATTGCC GTCAAATGCG ATCGAGGCGG TTAATGTTGC GCAACAGGGT
AATGAAATAG CACTTCGAAT TGACTTGAAA GAAGCACTTG CTTCCCCTCC GCCAGGGTTT
AGTGTTGCCA ATCCAGCGAA AATTGCCTTG GATTTTCAGT CGACTGCAAA CGGCTTGGGT
AAAAATAGTC AGGCTTTTAA CCAAGGTGAT CTGCGTAGCA TGAACGTCGT TCAGGTAGGT
GACCGCACGC GTGTGGTCCT TAACCTCGTC CGGAACATGA ATTACAAGAC TCGTCTGGAT
GGAAAAGCGC TCTATGTGAC GCTTACTCCG ATTGAGCGCT TGGCTGAATC GTCCGCCCAA
CGTACCACTC GATTTGCGGA AGAAAGCTTG GTTGGTGGCA AGCACGCGGT CAATGATGTC
GTGTTTCGTC GTGGTAAGGG CGGGGAGGGC CGGATAGTAG TCGATCTAAG TGATACAGGG
ACAGGTATCG ATATTCGACA ACAAGGATCG AACCTGATCG TCGACTTTAT GAAAACCACG
GTTCCTGATC GTTTGCGTCG GAAACTGGAC GTCACAGATT TCGCTACTCC GGTGACCAGC
GTTGAGACCA AGGCCTTTGG CGATAATGTA CGGATGGTCA TTACGCCGAT GGGTTTGTGG
GAGCACAATG CCTATCAAAG CGACAACCAA TTCATCGTTG AAGTGAAACG AGTCGTTGAG
GATCCCAATA AGCTGGTACA GGGCTCAAAG ATTGGCTACC AAGGTCCCAG AGTTAGTATC
AACTATCAAA ATGGTGATGT CCGTGCCCTG TTGCGCCTGA TGGCAGAGGA ACTAGGGCTT
AACGCGGTAA TCAGTGAAAC TGTTACTGGA ACCACGACCT TGGTGTTGAA GGATGTTCCT
GCGGATCAGG TAATTGACAT CATCTTCCAG CAAAAAGGGT TGGACATGCG GAAGAAGGGC
AACATCATCA TGATTGCCCC GCGCGATGAG ATAGCCACTC GCGAAAAGCT TGAGTTTGAA
TCGAAGCAGC AGATAAGCGA GTTGGAGCCG CTCAAACTCG AGCAGTTTCA GTTGAATTAC
CAGAAGGCGG CTGATGTTGC GCGTTTGCTG GCTGGCTTGC CGCCACTGGG CGCTGCGGGA
GCTGCTGCAG CTCCGGCGCC AGGGACAAAT GTTGCAGCAC AAAGGATTCT GAGCAAACGT
GGCAGTGCCG TGGCCGATCC TCAATCCAAC ATTATTTTCA TTAACGATAT TCCATCAAAG
CTGGAAGAAA TCCGTTCATT CATTGCTGCG ATCGATACCG GTGCTCGTCA GGTCTTGATC
GAAGCCCGAG TGGTGGAAGC GCAAGATAGC TTTAATCGTG CTCTTGGTGG AAAGTTTGGA
TTCCTTAATA AGCAAGCGGT TCAGCCAGCA GGAAGTGGAA TTAATGTTGC TGGCGGTAGT
TCAACAACTG CTGGGCAATC GACATCGACC CCGATGGTGG GGGTCAATCT GCCCTCCCCG
TCGACAGGAG GGTCGCTTGC ATTATCTTTA TTCACCGCAT CGTTCTCACG CATTCTAAAC
CTTGAACTTG CGGCGCTTGA GTCTGACGGC TTGGGCAAGA TTGTTTCTAG TCCGCGAGTG
ATTACTGCGA ACAACGTCAA GGCTAAGATT GAGGACGGGA CGGAAATTCC CTACGTAACG
ACCCAGAGCA GTGGTGGTAC CACCACTGCA ACCGTTAGCT TCAAGCCGGC AAAGCTTTCT
TTGGAAGTGA CTCCGCAGAT TACCCCGGAG GGGACTGTGC GGATGAACTT GGTTGTCAAG
AAAGAGGAGG CTGACTGGAC CAAGGCTGTC GTGCTGAACG GTTATGCCAA TCCTCCAATC
AAGAGTTCAG TGGTTGAAAC CAACGTTGTA GTTGAGAATG GTGGTACCGT TGTCATCGGT
GGTGTGTTCA TTACAGATAC GCAGAACTCG GTTGAAAAAG TGCCTCTGTT GGGTGACATC
CCGTTCTTTG GCTGGCTATT CAAGTATAAA AATGATATTG GCAAACGCCG CGAGTTGTTG
GTGTTCATTA CGCCGCGAGT CATTTCAGAC AAGATGCGTT TTGATTGA
 
Protein sequence
MKFINYAMAA ALTCLAVVSS ARAETLPSNA IEAVNVAQQG NEIALRIDLK EALASPPPGF 
SVANPAKIAL DFQSTANGLG KNSQAFNQGD LRSMNVVQVG DRTRVVLNLV RNMNYKTRLD
GKALYVTLTP IERLAESSAQ RTTRFAEESL VGGKHAVNDV VFRRGKGGEG RIVVDLSDTG
TGIDIRQQGS NLIVDFMKTT VPDRLRRKLD VTDFATPVTS VETKAFGDNV RMVITPMGLW
EHNAYQSDNQ FIVEVKRVVE DPNKLVQGSK IGYQGPRVSI NYQNGDVRAL LRLMAEELGL
NAVISETVTG TTTLVLKDVP ADQVIDIIFQ QKGLDMRKKG NIIMIAPRDE IATREKLEFE
SKQQISELEP LKLEQFQLNY QKAADVARLL AGLPPLGAAG AAAAPAPGTN VAAQRILSKR
GSAVADPQSN IIFINDIPSK LEEIRSFIAA IDTGARQVLI EARVVEAQDS FNRALGGKFG
FLNKQAVQPA GSGINVAGGS STTAGQSTST PMVGVNLPSP STGGSLALSL FTASFSRILN
LELAALESDG LGKIVSSPRV ITANNVKAKI EDGTEIPYVT TQSSGGTTTA TVSFKPAKLS
LEVTPQITPE GTVRMNLVVK KEEADWTKAV VLNGYANPPI KSSVVETNVV VENGGTVVIG
GVFITDTQNS VEKVPLLGDI PFFGWLFKYK NDIGKRRELL VFITPRVISD KMRFD