Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0214 |
Symbol | |
ID | 3569909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 229610 |
End bp | 231757 |
Gene Length | 2148 bp |
Protein Length | 715 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637678652 |
Product | type II and III secretion system secretin |
Protein accession | YP_283443 |
Protein GI | 71905856 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.00866012 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTA TTAACTATGC GATGGCTGCT GCCTTAACCT GCCTTGCTGT AGTGTCTTCT GCTCGCGCGG AAACATTGCC GTCAAATGCG ATCGAGGCGG TTAATGTTGC GCAACAGGGT AATGAAATAG CACTTCGAAT TGACTTGAAA GAAGCACTTG CTTCCCCTCC GCCAGGGTTT AGTGTTGCCA ATCCAGCGAA AATTGCCTTG GATTTTCAGT CGACTGCAAA CGGCTTGGGT AAAAATAGTC AGGCTTTTAA CCAAGGTGAT CTGCGTAGCA TGAACGTCGT TCAGGTAGGT GACCGCACGC GTGTGGTCCT TAACCTCGTC CGGAACATGA ATTACAAGAC TCGTCTGGAT GGAAAAGCGC TCTATGTGAC GCTTACTCCG ATTGAGCGCT TGGCTGAATC GTCCGCCCAA CGTACCACTC GATTTGCGGA AGAAAGCTTG GTTGGTGGCA AGCACGCGGT CAATGATGTC GTGTTTCGTC GTGGTAAGGG CGGGGAGGGC CGGATAGTAG TCGATCTAAG TGATACAGGG ACAGGTATCG ATATTCGACA ACAAGGATCG AACCTGATCG TCGACTTTAT GAAAACCACG GTTCCTGATC GTTTGCGTCG GAAACTGGAC GTCACAGATT TCGCTACTCC GGTGACCAGC GTTGAGACCA AGGCCTTTGG CGATAATGTA CGGATGGTCA TTACGCCGAT GGGTTTGTGG GAGCACAATG CCTATCAAAG CGACAACCAA TTCATCGTTG AAGTGAAACG AGTCGTTGAG GATCCCAATA AGCTGGTACA GGGCTCAAAG ATTGGCTACC AAGGTCCCAG AGTTAGTATC AACTATCAAA ATGGTGATGT CCGTGCCCTG TTGCGCCTGA TGGCAGAGGA ACTAGGGCTT AACGCGGTAA TCAGTGAAAC TGTTACTGGA ACCACGACCT TGGTGTTGAA GGATGTTCCT GCGGATCAGG TAATTGACAT CATCTTCCAG CAAAAAGGGT TGGACATGCG GAAGAAGGGC AACATCATCA TGATTGCCCC GCGCGATGAG ATAGCCACTC GCGAAAAGCT TGAGTTTGAA TCGAAGCAGC AGATAAGCGA GTTGGAGCCG CTCAAACTCG AGCAGTTTCA GTTGAATTAC CAGAAGGCGG CTGATGTTGC GCGTTTGCTG GCTGGCTTGC CGCCACTGGG CGCTGCGGGA GCTGCTGCAG CTCCGGCGCC AGGGACAAAT GTTGCAGCAC AAAGGATTCT GAGCAAACGT GGCAGTGCCG TGGCCGATCC TCAATCCAAC ATTATTTTCA TTAACGATAT TCCATCAAAG CTGGAAGAAA TCCGTTCATT CATTGCTGCG ATCGATACCG GTGCTCGTCA GGTCTTGATC GAAGCCCGAG TGGTGGAAGC GCAAGATAGC TTTAATCGTG CTCTTGGTGG AAAGTTTGGA TTCCTTAATA AGCAAGCGGT TCAGCCAGCA GGAAGTGGAA TTAATGTTGC TGGCGGTAGT TCAACAACTG CTGGGCAATC GACATCGACC CCGATGGTGG GGGTCAATCT GCCCTCCCCG TCGACAGGAG GGTCGCTTGC ATTATCTTTA TTCACCGCAT CGTTCTCACG CATTCTAAAC CTTGAACTTG CGGCGCTTGA GTCTGACGGC TTGGGCAAGA TTGTTTCTAG TCCGCGAGTG ATTACTGCGA ACAACGTCAA GGCTAAGATT GAGGACGGGA CGGAAATTCC CTACGTAACG ACCCAGAGCA GTGGTGGTAC CACCACTGCA ACCGTTAGCT TCAAGCCGGC AAAGCTTTCT TTGGAAGTGA CTCCGCAGAT TACCCCGGAG GGGACTGTGC GGATGAACTT GGTTGTCAAG AAAGAGGAGG CTGACTGGAC CAAGGCTGTC GTGCTGAACG GTTATGCCAA TCCTCCAATC AAGAGTTCAG TGGTTGAAAC CAACGTTGTA GTTGAGAATG GTGGTACCGT TGTCATCGGT GGTGTGTTCA TTACAGATAC GCAGAACTCG GTTGAAAAAG TGCCTCTGTT GGGTGACATC CCGTTCTTTG GCTGGCTATT CAAGTATAAA AATGATATTG GCAAACGCCG CGAGTTGTTG GTGTTCATTA CGCCGCGAGT CATTTCAGAC AAGATGCGTT TTGATTGA
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Protein sequence | MKFINYAMAA ALTCLAVVSS ARAETLPSNA IEAVNVAQQG NEIALRIDLK EALASPPPGF SVANPAKIAL DFQSTANGLG KNSQAFNQGD LRSMNVVQVG DRTRVVLNLV RNMNYKTRLD GKALYVTLTP IERLAESSAQ RTTRFAEESL VGGKHAVNDV VFRRGKGGEG RIVVDLSDTG TGIDIRQQGS NLIVDFMKTT VPDRLRRKLD VTDFATPVTS VETKAFGDNV RMVITPMGLW EHNAYQSDNQ FIVEVKRVVE DPNKLVQGSK IGYQGPRVSI NYQNGDVRAL LRLMAEELGL NAVISETVTG TTTLVLKDVP ADQVIDIIFQ QKGLDMRKKG NIIMIAPRDE IATREKLEFE SKQQISELEP LKLEQFQLNY QKAADVARLL AGLPPLGAAG AAAAPAPGTN VAAQRILSKR GSAVADPQSN IIFINDIPSK LEEIRSFIAA IDTGARQVLI EARVVEAQDS FNRALGGKFG FLNKQAVQPA GSGINVAGGS STTAGQSTST PMVGVNLPSP STGGSLALSL FTASFSRILN LELAALESDG LGKIVSSPRV ITANNVKAKI EDGTEIPYVT TQSSGGTTTA TVSFKPAKLS LEVTPQITPE GTVRMNLVVK KEEADWTKAV VLNGYANPPI KSSVVETNVV VENGGTVVIG GVFITDTQNS VEKVPLLGDI PFFGWLFKYK NDIGKRRELL VFITPRVISD KMRFD
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