| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0207 |
|---|
| Symbol | |
|---|
| ID | 3569902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 222484 |
|---|
| End bp | 223746 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637678645 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_283436 |
|---|
| Protein GI | 71905849 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACT TTGCCCTGAA TAACGGCGTC CTGCACGCCG AATCCGTTGC CCTGCCCGCT
ATCGCCGACC AGTTCGGCAC TCCGGCCTAC GTTTACTCCC GCGCTGCGCT GGAAGCTTCG
TTGCGCGAAT TCCACGATGT CCTCGGCGGC CACGTCGCCG GCCAGGGAGC CTTGGTTTGC
TATGCAGTTA AAGCCAATTC CAATTTAGCC ATCCTGAACG TTTTCGCCCG CCTTGGCGCT
GGTTTCGATA TTGTCTCCGG CGGCGAACTG CAGCGCGTGC TGGCTGCTGG TGCCGATCCG
AAGAAGGTCG TTTTCTCCGG CGTCGGCAAG ACGGCTGATG AAATGAAGCT GGCACTGGAC
GTCGGCATTT TTTGCTTCAA TGTCGAATCT GCCGCCGAAC TGGAACGGCT GAATGAGGTC
GCCAGCCAGT GCGGCAAGAA GGCGCCGATC AGTCTGCGCG TCAATCCAAA CGTCGATCCG
AAAACCCACC CCTACATTTC GACGGGTCTC AAGGGTGCCA AGTTCGGCGT GGCCTACGAC
AATGCGCTAG ACTTGTACCG CCGCGCTGCT GCGCTACCGA GCATAGAAGT CACTGGCATC
GACTGCCATA TCGGCTCGCA ATTGCTCGAC CCGTCGCCTT TCGTCGAAGC GCTCGATCGC
ATTCTGGCCC TGGTCGATCA GATGGCTGCC GAAGGCATCC ACATTCATCA CCTCGACCTC
GGCGGCGGCC TTGGCATCAA GTACAACGCC GAACAGGCGC AACCAACTGT CGCCTCCTAC
CTGACGCCGC TGCTCGACAA GCTCGCCGGT CGCGGCCTGC AGGTCGTTCT CGAACCGGGT
CGCCGGCTGG TTGGTAATGC TGGCCTGCTG CTCACCCGCA TCGAATACCT CAAGCAGGGC
GAGGCCAAGA ATTTTGCCAT CATCGACGCC GCCATGAACG ACCTGATGCG CCCTGCGCTC
TATGAAGCGT GGCACGACAT CAATCCGGTA GTGCCACGCT CAGGTGTGGC CACGGAGTAC
GACGTCGTTG GTCCGGTCTG CGAAACCGGC GATTTTCTCG GCCAGGCCCG CCCGCTGGTG
GTTGAAGCAG GGGATTTGCT GGCTGTGATG TCAGCCGGCG CTTATGGCAT GGCCATGGCC
TCGAACTACA ACACCCGGCC ACGGGCGGTT GAAGTGATGG TCGATGGCGA CAAGATTCAC
GTCATCCGCC AGCGTGAAAC CGTCGAACAG CTGTACGCCG GTGAGTCCAT CCTGCCGCAG
TGA
|
|---|
| Protein sequence | MTHFALNNGV LHAESVALPA IADQFGTPAY VYSRAALEAS LREFHDVLGG HVAGQGALVC
YAVKANSNLA ILNVFARLGA GFDIVSGGEL QRVLAAGADP KKVVFSGVGK TADEMKLALD
VGIFCFNVES AAELERLNEV ASQCGKKAPI SLRVNPNVDP KTHPYISTGL KGAKFGVAYD
NALDLYRRAA ALPSIEVTGI DCHIGSQLLD PSPFVEALDR ILALVDQMAA EGIHIHHLDL
GGGLGIKYNA EQAQPTVASY LTPLLDKLAG RGLQVVLEPG RRLVGNAGLL LTRIEYLKQG
EAKNFAIIDA AMNDLMRPAL YEAWHDINPV VPRSGVATEY DVVGPVCETG DFLGQARPLV
VEAGDLLAVM SAGAYGMAMA SNYNTRPRAV EVMVDGDKIH VIRQRETVEQ LYAGESILPQ
|
|---|
| |