| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0058 |
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| Symbol | |
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| ID | 3567820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 66585 |
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| End bp | 68936 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637678487 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_283287 |
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| Protein GI | 71905700 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.218721 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTGA TGAAACTCCC CCGTTCGCTG CGCACCCGCC TGATTACGCT GAGCATCATC
GTCGAGATCG TGATGATCTC GGCCATCGTC TGGAACAGCC AGCGCCTGAT CGAGGCGCAT
CTGGTCCGCC AGTTTGAACT GCGCCGTGCT GAAATCAGCT TGTTGCTGCA AGCCGCGCTG
GGCGCGGCCA TGGTCCAGCG CGACTATGCC GCAGTCAGCG AAACACTGAC CAGCGCCCAG
CAAATGCAGG GCATGGTCTA CCTGATCATG TTCGATGAAC GCGGCCAGCG TATTGCCGCT
GCCAATGCCG AACATGACAT AAAGCCGGCC GGGGTGCGTG ATTTCCGCGT TCCGGTGAGC
GTCGAAAAAC GCCCCTACGG CGAGCTTCAG GTCGGTATCG ATCTGCGCTT TCTCGAAGAG
GCAAGACAGG AAATCCTGTT CCAGAATATC GCGCTCGCCC TGGTCGGCAT CCTGACCTCG
TCGGTCGTCC TTGGCGGCAT TGCCTTGTGG CTGACGCGCC GCCTTGGCCG GCTGGTCAAG
GCCAGCCACG ATCTGGCTGA TGGGCGGGGT TTCAAACCAA TGCCTGCTAG CAGCAACGAC
GACATCGGCC AAGTCATCAG CGCCTTCAAT GGCATGGCAA AAACACTCGA CCGCCGGGTC
AGGGATCTGC AGGAAGCCGA AGCTCGGCAA AGGGCACTGC TCGAAACGGT CGATGCGGAG
CGTTCGCGAC TCGACGCGCT GCTTTCGGCG ATGCGTCTGG GACTGGTTTT TGTCGATCAG
GACGAACGGA TCTGCTATCT GAACCCGGCC TTCGCCAGCC TCTGGTCCGT CAGTCTGGAC
GGTCATCTCG CCAATCTGCC GCTGGCCGAT CTGCGCCGCT GGCTGGATGC CGTACTGACC
AACGGTGGCC AAAGCCAGCT GTTCAGGGGT GACGGCACCA GTGTGGAACT GGCCTTGCAC
GAAGGCCGAG TCATCACCCA GCAAGGGATA GCAGTCACCA GCGCCAGCGG TAGCGAGTTG
GGACGTCTGT GGATTTTCGA GGACGTGACC AACGAGCGAC AACTGGCCGA ACATCTGCTG
TTCATGGCCG AGCGTGACCC GCTGACCGGA CTCGCCAACC GCGCCCGTTT TGCCGCCGAA
CTGGACAGGC TGGTCAGCCG CTTTCAGCGT GATGCGACGC AGAGCGGTGC CGTGCTGTAT
TTCGATATCG ATGAATTCAA GACGATCAAC GACACCTTCG GCCATCGGGT TGGCGACAAC
GTGCTGGTCC GGACGGCTGA TGTCGTCAGC AAGTTGGTCC GTACTGGCGA GTTATTGGCC
CGCCTGGGGG GGGACGAATT TGCCATTGTT GCGCCGGGGG CAGATCTGGA CGGCGTCCAG
GCGATGGCCG AACGGGTCGT CAAAGCACTG ACCGGCCTCA GTTTCGAGTT CGACGGCAAG
CGTTTCGGGC TGACCATCAG TCTCGGCATC GCGCTCTTGC CGGAGCACGC CGCCAGCGCC
GAGGAACTGG TTGCCCACGC CGATGCCGCA ATGTACCAGG CCAAGCGCAG CGGCAAGAAC
TGCTGGCGCA TCTATCGGCC CGACCTCGAC GAATCCTCGC ACATGCTCAG CCAGCTCGGC
TGGAACGACA AGATCCAGGC GGCACTGAAC GAAAACCGTC TGGTTTTGCA CTTCCAGGGC
GTGCATGTAA CGGCCACCCG AGCGATCAGC CACTACGAAG CCTTGGTTCG CATGATCGAT
CCCGACAACC CGGACGAATT GCTGCAACCA GGCAGCTTCA TTCCGGCCGC CGAGCGCACC
GGGCGCATTG TCGACATCGA CCGCTGGGTG ATCGGCACCG CCATTCACAA GCTGGCCGGC
ATGCCGAGTC TGCCTGCCCT CGCCATCAAC GTGTCGGCCC GCTCCTTCGA CGATCCGACG
CTGGCCCGCA CGATCAGCGA CCTGCTCACC GAGTTTCACG TCAACCCACA GCGCCTGATC
ATCGAACTGA CCGAAACGGC GGCGCTGGCC AACATCCGTG ATTCAGAACG TTTCATCGAC
GACCTGCGCC GGCTCGGCTG CACTGTCTGC CTCGACGACT TCGGCGTCGG CTTCTCGTCC
TTCGCCTATC TGAAGCACCT GTCGGCCGAT GTCCTGAAAA TCGACGGCAT GTTCATTCGC
AATCTGGTCA GCAATCGCGA GGATCAAGTC TTTGTCCGGG CCATTGTCGA AGTCGCCCGC
GGCCTGGGCA AGAAGACCGT TGCCGAATTC GTCGGTGATG CCCCGACACT GGCCCTGCTT
GGCGAACTCG GCGTCGATTA CGCGCAGGGT TACTACCTTT CCTTCCCGAT TGCCGAGATA
AGCCCATCCT GA
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| Protein sequence | MTLMKLPRSL RTRLITLSII VEIVMISAIV WNSQRLIEAH LVRQFELRRA EISLLLQAAL
GAAMVQRDYA AVSETLTSAQ QMQGMVYLIM FDERGQRIAA ANAEHDIKPA GVRDFRVPVS
VEKRPYGELQ VGIDLRFLEE ARQEILFQNI ALALVGILTS SVVLGGIALW LTRRLGRLVK
ASHDLADGRG FKPMPASSND DIGQVISAFN GMAKTLDRRV RDLQEAEARQ RALLETVDAE
RSRLDALLSA MRLGLVFVDQ DERICYLNPA FASLWSVSLD GHLANLPLAD LRRWLDAVLT
NGGQSQLFRG DGTSVELALH EGRVITQQGI AVTSASGSEL GRLWIFEDVT NERQLAEHLL
FMAERDPLTG LANRARFAAE LDRLVSRFQR DATQSGAVLY FDIDEFKTIN DTFGHRVGDN
VLVRTADVVS KLVRTGELLA RLGGDEFAIV APGADLDGVQ AMAERVVKAL TGLSFEFDGK
RFGLTISLGI ALLPEHAASA EELVAHADAA MYQAKRSGKN CWRIYRPDLD ESSHMLSQLG
WNDKIQAALN ENRLVLHFQG VHVTATRAIS HYEALVRMID PDNPDELLQP GSFIPAAERT
GRIVDIDRWV IGTAIHKLAG MPSLPALAIN VSARSFDDPT LARTISDLLT EFHVNPQRLI
IELTETAALA NIRDSERFID DLRRLGCTVC LDDFGVGFSS FAYLKHLSAD VLKIDGMFIR
NLVSNREDQV FVRAIVEVAR GLGKKTVAEF VGDAPTLALL GELGVDYAQG YYLSFPIAEI
SPS
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