| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0020 |
|---|
| Symbol | |
|---|
| ID | 3570044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 25900 |
|---|
| End bp | 26931 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637678449 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_283249 |
|---|
| Protein GI | 71905662 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 0.732804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.419154 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGCA TTATATCCGC GCTCATCCTG GCCGTGACGG CCGTCTGCGC ATCGGCCGCC
GAGCCGCTAC AACTCGTCGA CAATCCGCCT GATCGTCATA TCGTCGTCAA GGGCGACACG
TTGTGGGGCA TTTCCGGCAA ATTCCTCAAG CAGCCGTGGC GCTGGCCGGA AATCTGGCAG
ATGAACAAGG AACAGATCAA GAACCCGCAC TGGATTTATC CGGGCGACGT CATCATGCTC
GATATGTCGA GCGGTACCCC GCGCCTGAAG ATTGGCAAAC CCGTCACCGG GCAAAGCGGC
AAGGTTCAGC CGACCGTCTA TAGCACCCCG GTGCAGCAGG TCATTCCGAG CATCCCCCCC
AATGCCATTG AACCGTTCCT CTCCAAGCCA CTGATTATCG AGACAACGGA TCAGAACGCG
ACAGTCAGCA TCGTCGCAAC CCAGGAAGAT CGCATGCTGG TCGGTACGGG TGATTCTTTC
TACGCCCAAG GCATTCCCGA TTCAAGCATC GAAAAATGGA ATGTATTCCG CAAGGGCAAG
CCGCTGAAAG ATCCGGATAC CGGCGAGACT ATTGCTTACG AAGCCGTTTT CCTCGGCAAT
GCCCGCTTGG TCAAGCCAGG CGAACCGGCA ACGCTGCGCG TCACCCTGGC CAAAGAAGAA
ATGAATCGCG GCGACAATCT TTTGCCCGCT CCTCCCCCGG AAATTCTGAC CTACGTACCG
CACCGCCCTG AGCAGGAAGT CTCAGCCAAA GTGCTTGGTA TTTATGGCGG GGTGCAAGAG
GGTGGCGCCA ATTCGGTCAT TTCCATCAGC CGTGGCAAGA ATAGCGGTCT CGAACTGGGA
CATGTCGTTG CGCTCTACCG GAATCGTGTT TCGGTCAGCA TTGATGAAGA CGGCCGTCGC
ACTTCAACTC CGGTACCTGA AGAACGTTAT GGCCTTGCCT TCGTTTTCCG CGTCTTTGAC
CGCGTCGCCT ACGCCTTGGT CGTCGAGTCC TCCAAGGCAG TCATCATCGG GGACTCCGCA
CTGAACCCGT GA
|
|---|
| Protein sequence | MVRIISALIL AVTAVCASAA EPLQLVDNPP DRHIVVKGDT LWGISGKFLK QPWRWPEIWQ
MNKEQIKNPH WIYPGDVIML DMSSGTPRLK IGKPVTGQSG KVQPTVYSTP VQQVIPSIPP
NAIEPFLSKP LIIETTDQNA TVSIVATQED RMLVGTGDSF YAQGIPDSSI EKWNVFRKGK
PLKDPDTGET IAYEAVFLGN ARLVKPGEPA TLRVTLAKEE MNRGDNLLPA PPPEILTYVP
HRPEQEVSAK VLGIYGGVQE GGANSVISIS RGKNSGLELG HVVALYRNRV SVSIDEDGRR
TSTPVPEERY GLAFVFRVFD RVAYALVVES SKAVIIGDSA LNP
|
|---|
| |