| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0016 |
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| Symbol | |
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| ID | 3570040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 20514 |
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| End bp | 21221 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637678445 |
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| Product | ribosomal small subunit pseudouridine synthase A |
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| Protein accession | YP_283245 |
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| Protein GI | 71905658 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 76 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.162823 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACTAG AACGTATCCT CCAAAAGCAT GGTTTCGGTT CCCGCAGGGA ATGCCGAGGC
CTCATCCGCC GTGATCGTGT CGCGGTTAAC GGCCAGGTTT GCGACGATCC TTTTGTCGAA
CTCGACACCG AAGGACTGGT ATTCACGGTC GATGGCGTCG ATTGGCCTTA CGCCGAATTC
GCCACGCTGA TGCTCCACAA GCCGGCCGGC TACGAATGCT CGCGCAAGCC AAAACATCAC
GCCGGCGTCC TTGAACTGCT GCCAATTCCG TTGCGCGAAC GCGATGTTCA GCCGATCGGC
CGTCTCGACG AAGACACGAC CGGCTTGCTC CTGATCACCA ATGACGGGCA GTTGAACCAC
CAGCTTTCAT CGGCCAAGCG CAAGGTGCCG AAAGTCTATC TGGCAACCAC CAAGCATCCG
CTCGATCAGG CGCAGATCGA TCAGCTGGTG GCAGGTGTGC TCCTTGCCGA CGAATACGAA
CCGATTAGCG CTGCTGCCGC CGAAATCGTT GGTGAAAAAC TGCTGCGCCT GACCCTGACC
GAAGGCAAGT ACCATCAGGT CAAACGGATG GTCGCTGCTG TCAGCAACCG TGTCGAGGCC
CTGCATCGTG AAGCCGTCGG CGAACTGACG CTGCCGCCTG ACCTCAAACC CGGCGAGTGG
CGTTGGTTGT CAGCGGCCGA CCTGCAAAAA CTGGGCTATT CCAAATGA
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| Protein sequence | MQLERILQKH GFGSRRECRG LIRRDRVAVN GQVCDDPFVE LDTEGLVFTV DGVDWPYAEF
ATLMLHKPAG YECSRKPKHH AGVLELLPIP LRERDVQPIG RLDEDTTGLL LITNDGQLNH
QLSSAKRKVP KVYLATTKHP LDQAQIDQLV AGVLLADEYE PISAAAAEIV GEKLLRLTLT
EGKYHQVKRM VAAVSNRVEA LHREAVGELT LPPDLKPGEW RWLSAADLQK LGYSK
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