| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0003 |
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| Symbol | gyrB |
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| ID | 3570027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 2938 |
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| End bp | 5442 |
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| Gene Length | 2505 bp |
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| Protein Length | 834 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637678432 |
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| Product | DNA gyrase subunit B |
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| Protein accession | YP_283232 |
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| Protein GI | 71905645 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0123108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00974324 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGAAG AAAACACGCC AATGAGCAGC CCGCAAGACG CCGGATCACC GGCCTACGGT
GAATCCAGTA TCCAGATCCT CGAAGGCCTG GAGGCTGTCC GCAAGCGTCC GGGCATGTAC
ATTGGCGATA CCTCGGACGG TACCGGTTTG CACCATCTGG TCTTCGAAGT GGTGGATAAC
TCCATCGACG AAGCGCTGGC TGGGCATTGC AACGACATCA TTGTCACCAT CCATACCGAC
AACTCGATCA GCGTCATCGA CAACGGCCGG GGTATCCCGA CCGGCGTCAA GATGGACGAC
AAGCACGAGC CGAAGCGCTC GGCGGCTGAA ATTGCGCTGA CCGAGTTGCA CGCTGGCGGC
AAGTTCAACC AGAACTCATA CAAGGTATCC GGTGGTCTGC ACGGGGTCGG TGTTTCCTGC
GTCAATGCGC TGTCCAAGTT CCTGCGCCTG ACCATTCGCC GCGATGGCAA GAAGCACTTC
ATGGAATTCT GCCGTGGCGT GCCGGTTGAC CGCAGTATTG AAGTCCGCAA TGGACTTGAA
GTGTCGCCGA TGAAGATTCT TGGCGATACC GAGAAGCGCG GCACCGAAGT GCACTTCCTG
GCCGACGAGG AAATCTTTGG CCACGTTGAA TTCCACTACG AAATTCTCGC CAAGCGCTTG
CGCGAACTCT CCTTCCTGAA CAACGGCGTC AGCATCAAGC TGGTCGACCA GCGTACCGGC
AAGGAAGAAC TCTTTGCTTT TGCTGGTGGT GTACAGAGCT TTGTCGAGTA CATCAACCGT
ACCAAATCGG TCCTTCACCC GAGCATTTTC TACTCGGCCG GCGAGGCCAA GGTGGGTCAG
GGCGCTGCCG ACACTGGCAT CATCATCGGC GTTGAAGTGG CGATGCAGTG GAACGACTCC
TATCAGGAAC AGGTGCTCTG CTTCACCAAC AACATTCCGC AGTCGGACGG TGGTACCCAC
CTGACCGGCC TGCGCGCCGC GATGACCCGC GTCATCAACA AATACATCGA CGAAAACGAG
ATCGCCAAGA AGGCCAAGGT CGATATCGCT GGCGACGACA TGCGCGAAGG CCTGGCCTGC
GTGCTATCGG TCAAGATGCC CGATCCGAAA TTCGCGTCGC AGACCAAGAT GAAGCTGGTT
TCCTCCGAAG CCCGTGCTGC AGTCGAGGAA GTCGTCGCCC AGAAACTTGC CGATTTCCTG
CTTGAGCGAC CGGTTGACGC CAAGATGATC TGCGGCAAGA TCGTCGAAGC CTCGCGGGCT
CGCGAAGCCG CCCGTCGTGC GCGTGAAATG ACGCGCCGCA AGGGGGTTCT CGACGGCGTC
GGCCTGCCCG GCAAGCTGGC CGATTGTCAG GAAAAAGACC CGGCGCTGTG CGAAATCTAC
ATCGTCGAGG GTGACTCCGC CGGCGGCTCC GCCAAGCAGG GTCGTGACCG CAAGTTCCAG
GCCATCCTGC CGCTGCGCGG CAAGGTGCTC AACGTCGAGA AAGCGCGTTT CGACAAGCTG
ATCTCGTCCG AACAGATTGT CACGCTGATC ACCGCGCTCG GCACCGGTAT TGGCAAGGAC
GACTTCAACG TCGAAAAATT GCGTTACCAC CGCATCATCA TCATGACTGA CGCGGACGTA
GACGGCGCCC ACATCCGCAC CCTGCTACTG ACGCTGCTCT ACCGCCAGAT GCCCGAGTTG
ATCGACCGCG GTTACGTCTA TATCGCCCAG CCGCCGCTCT ACAAGGTCAA GCACGGCAAG
ACCGAGCGGT ACCTGAAGGA CGATCAGGAA TATCACCAGT TCCTGCTCAA CATGGCGCTC
GACGAAGCGG TGCTGACGCC GCGTGCCGAC GCCGAAGGCA TCACCGGCCC GGCCCTGGAA
GGTCTGGCCC GCTCGTGGCT GGCCACTGAG GCCGTAATCG ACCGCCTGTC CCACCTGATC
AATCCGGAAG TGCTGCAGTC CATCGTTCGC CACAACATCG CGATTGACCT GTCCAGCGAA
GAAAATGCGC GTGCCAGTGC CGAGCGGATC GCTGGGTTCA TCCCGGCCGG AACCCGCATG
GTGCCGAAGT TTGACGATAT CCAGGAGCGC TGGATACTGC GCGTCGAGCG CATGCACCAC
GGCAACCTGA AGGTCGGCCT GATCGATGAG GATTTGCTGC TCTCCGGTGA CTTCACGCAG
TTGCGCCGCA CGGCCGAAAC ACTGGCTGAT ATGTTCGGCG CTGGAGCCAC CATGGCCCGT
GGCGAGAAGA AACAGGTTGT GACCAACTTC GCCGACGCCA TGAAGTGGCT GCTCAATGAA
GTCGAACGCG GCATTGCCAA GCAGCGCTAC AAAGGTCTGG GCGAAATGAA CCCCGAGCAG
TTGTGGGAAA CGACCATGGA CCCGAAGGTT CGCCGCCTGT TGCGCGTGCA GATTGACGAC
GCCATTGCGG CTGACGAAAT TTTCACGACG CTGATGGGTG AGGATGTCGA GCCGCGTCGG
GCATTCATCG AAACGAACGC CTTGAGTGCT CGGGTCGATA TTTGA
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| Protein sequence | MSEENTPMSS PQDAGSPAYG ESSIQILEGL EAVRKRPGMY IGDTSDGTGL HHLVFEVVDN
SIDEALAGHC NDIIVTIHTD NSISVIDNGR GIPTGVKMDD KHEPKRSAAE IALTELHAGG
KFNQNSYKVS GGLHGVGVSC VNALSKFLRL TIRRDGKKHF MEFCRGVPVD RSIEVRNGLE
VSPMKILGDT EKRGTEVHFL ADEEIFGHVE FHYEILAKRL RELSFLNNGV SIKLVDQRTG
KEELFAFAGG VQSFVEYINR TKSVLHPSIF YSAGEAKVGQ GAADTGIIIG VEVAMQWNDS
YQEQVLCFTN NIPQSDGGTH LTGLRAAMTR VINKYIDENE IAKKAKVDIA GDDMREGLAC
VLSVKMPDPK FASQTKMKLV SSEARAAVEE VVAQKLADFL LERPVDAKMI CGKIVEASRA
REAARRAREM TRRKGVLDGV GLPGKLADCQ EKDPALCEIY IVEGDSAGGS AKQGRDRKFQ
AILPLRGKVL NVEKARFDKL ISSEQIVTLI TALGTGIGKD DFNVEKLRYH RIIIMTDADV
DGAHIRTLLL TLLYRQMPEL IDRGYVYIAQ PPLYKVKHGK TERYLKDDQE YHQFLLNMAL
DEAVLTPRAD AEGITGPALE GLARSWLATE AVIDRLSHLI NPEVLQSIVR HNIAIDLSSE
ENARASAERI AGFIPAGTRM VPKFDDIQER WILRVERMHH GNLKVGLIDE DLLLSGDFTQ
LRRTAETLAD MFGAGATMAR GEKKQVVTNF ADAMKWLLNE VERGIAKQRY KGLGEMNPEQ
LWETTMDPKV RRLLRVQIDD AIAADEIFTT LMGEDVEPRR AFIETNALSA RVDI
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