Gene Psyc_2139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_2139 
Symbolfmt 
ID3516127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand- 
Start bp2641656 
End bp2642741 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content48% 
IMG OID637670855 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_265420 
Protein GI71066693 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones5 
Fosmid unclonability p-value0.00931795 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGACAC TTGCTTGTGC CCCCGATGTA TCTCTGACTC TAACCACCCT TAAGCCAACC 
ACTACGGAGC GATTAAGAGT GGTGTTTGCT GGCACGCCTG AGTTTGCAGC TATAAGCCTT 
GAGGTATTAA TCAATCAGCA AGACGCGCTC AATATCGATA TTGTGGCAGT ATATAGCCAG 
CCTGATCGTA AAGCCGGCCG CGGACAAAAA TTTGCAGAAT CTGCGGTCAA GCAAGTAGCG 
TTGGCACATA ATATCGCCGT TGAGCAGCCA GAGACCTTTA AAAAGTCAAG TATAGAGGGA 
ATGACGGCAA GGCAAACTTT TCAAGACTAT CAGCCAGATG TAATGATTGT CGCTGCTTAT 
GGGTTGATTC TACCCATTGG TGTCTTGAAT ACGCCTACTT ACGGTTGCCT CAATATTCAT 
GGCTCGTTAT TACCACGCTG GCGCGGTGCG GCACCTATTC ACCGCGCAAT ATTAGCCGGA 
GATACCGAGA CGGGTATTAC CATCATGCAG ATGGATAAAG GGCTTGATAC TGGCGACATG 
CTTTATAAAG TCCGCGCTCC TATTGAGTCT GATGATACGG CTGCCAGCCT ACATGATAAA 
ATGGCTGAGC TTGGTGCGAC CGCCATTACT ACCGTGCTAC AAGATTTAGC ACACTATCAA 
GCTCAAGCTA TAGCACAAGA TGACAGTCAA GCCAATTATG CTGAAAAACT CGTCAAAACT 
GAAGGCGAAA TTGACTGGAC GCAGTCTGCT ACTGTGATTG AACGACAAAT TCGCGGCTTG 
ACCCCATGGC CAGGTGCCTA TACCTTTTTG GCAGGACAGC GTGTCAAGAT TTTAGCCAGT 
CTACCTGTGA ATGCGTCGCA GCCAACCGAT CAACCAGCAG GGACGGTCAT TAGTGTTGGG 
CGCAAGGCAG TCTTAGTCGC TTGTGGTAAT GACAGCAATA CTGATACTGG TATTGAAACA 
CCGCAAGCCA GTACTTTAGC CATTACTCAG CTACAGTTCG CAGGCAGCAA GCCTGTGAGA 
GCCGAACAAA TTTGCCATGG CAATCAGCTT AATGATGGCG ACCAGTTCAG TAAAGAAACA 
AAATAA
 
Protein sequence
MTTLACAPDV SLTLTTLKPT TTERLRVVFA GTPEFAAISL EVLINQQDAL NIDIVAVYSQ 
PDRKAGRGQK FAESAVKQVA LAHNIAVEQP ETFKKSSIEG MTARQTFQDY QPDVMIVAAY 
GLILPIGVLN TPTYGCLNIH GSLLPRWRGA APIHRAILAG DTETGITIMQ MDKGLDTGDM 
LYKVRAPIES DDTAASLHDK MAELGATAIT TVLQDLAHYQ AQAIAQDDSQ ANYAEKLVKT 
EGEIDWTQSA TVIERQIRGL TPWPGAYTFL AGQRVKILAS LPVNASQPTD QPAGTVISVG 
RKAVLVACGN DSNTDTGIET PQASTLAITQ LQFAGSKPVR AEQICHGNQL NDGDQFSKET 
K