Gene Psyc_1934 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_1934 
SymbolfadB 
ID3515904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp2382574 
End bp2384733 
Gene Length2160 bp 
Protein Length719 aa 
Translation table11 
GC content45% 
IMG OID637670632 
Productmultifunctional fatty acid oxidation complex subunit alpha 
Protein accessionYP_265216 
Protein GI71066489 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID[TIGR02437] fatty oxidation complex, alpha subunit FadB 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.615527 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTATACC AAGGAAATCG CATTACGGTG ACAATGCTAG AGGATGGCAT CGCCAACATG 
CAGTACAACG CCGAAAATGA GAGCGTGAAC AAGTTTGATA CTGAGACTAA TAAGCAGTTT
GCTGAAGTCG TTAATGCGTT AGAAAAAGCG GATGACGTTA AGGGCTTAAT TGTCACTTCA
AGCAAAGGCG TCTTTATCGC TGGTGCGGAC ATCACGGAAT TTGTGGCCTC TTTTAAGCAA
TCAGAAGAAG AAATCAAAGA TTGGGTTATT AATATTAATG ACGCCTTTAA TCGCTTTGAA
GACCTACCAT TCCCGAAAGT AGCTGCCATC AATGGCGCCG CGCTTGGCGG TGGTTGTGAG
ATGACTTTAG TTTGCGAATA TCGTGTCATG AGTGACAAAG CGATCATCGG TCTACCAGAA
ACTCAACTCG GTATTTTCCC AGGTTTTGGT GGTACCGTGC GTAGTACGCG TGTCATTGGT
ATCGATAATG CGCTTGAGCT GATTGCAACG GGTGCACCTA AAAAAGCACT TGATGCCCTA
AAACTAGGCT TGGTTGATGC GACCGTTGCT GCTGATGATT TGCAAGATGC TGCCATTGAT
CTGGTCAAAA AATGTATCTC AGGTGAGCTT GATTGGAAAG CGAAGCGTGA AGAGAAGCTG
GTTGCTGTTA AATTAAATCA GCTTGAACAA GCGATGGCGT TTAACAGTGC AAAAGGTATG
ATTTTTGCCA AAGCCAATCC TAAGCAATAC CCTGCGCCAG CACTTGCTAT CGCTGCTATC
GAAAAACACG TTAACTTACC ACGTGATAAA GCAATCGAAG TAGAAGCGGC AGGTTTTGCA
AAAGCTGCGA AAACCCCACA AGCAGAAAGC TTGGTTGGTC TGTTCTTAAG CGATCAGTTG
GTTAAAAAAT TAGCCAAGCA ACACAGCAAA AAAGCACATG AAATTAATGA AGCGGCAGTA
TTGGGTGCTG GTATCATGGG CGGCGGTATC GCTTATCAGG CAGCCAGCAA AGGCTTGCCA
ATCATCATGA AAGACATCAA GTCTGAGCAA TTAGACCTTG GTATGGGCGA AGCCAGCAAG
TTATTGGGCA AAATGGTTGA TCGCGGTAAG ATGACCCCCG CCAAAATGGG CGAAACCTTA
AGCCGTATCC GTCCTACTTT GAATTATGGC GATTTTGCTG AAACGGACAT CGTTATCGAA
GCAGTGGTAG AAAATCCAAA TGTGAAGCGT GCGGTATTAA AAGAAGTTGA AGGCTTGGTA
AAAGACGATT GTATCCTAGC CTCAAACACT TCGACTATCT CTATTACTTT CTTGGCTGAA
GCACTTGAGC GTCCAGAAAA CTTCGTCGGT ATGCATTTCT TTAACCCAGT ACACCGTATG
CCATTGGTCG AAGTTATCCG CGGTGAGAAA TCATCTGAAG AAGCGATTGC GACCACGGTT
GCACTAGCCT CTAAAATGGG TAAAGTACCT GTTGTCGTTA ATGACTGCCC AGGTTTCTTA
GTCAACCGCG TATTGTTCCC ATACTTTGGC GCCTTTGATT TATTACTTAA GCAAGGTGCT
GATTTTGCTC ATGTCGATAA AGTCATGGAA AAATTCGGCT GGCCTATGGG TCCTGCATAT
CTAATCGACG TTGTTGGTTT AGATACGGGT GTTCATGGCG CAGAAGTCAT GGCAGAAGGT
TTCCCTGACC GCATGAAGCC TGATTATAAA GGTGCCATCG AGCTTTTATA TGAAAACAAA
CGCCTAGGTC AGAAAAATGG TGTTGGTTTC TATAAGTATG AAATGGACAA ACGTGGCAAG
CCAAAGAAAG TTGCTGATGA AGCCACTTAT GAGCTATTAA AAACGACGAC TGATAGCGAA
AAACAGACCT TTGATGATCA AGCAATCATC GACCGTACCA TGCTGGCTTT CTGTAATGAA
ACCGTACGCT GCCTAGAAGA CAACATCGTC AGCACGCCGT CAGAAGCGGA TATGGCGATG
ATCATGGGTG TTGGTTTTCC ACCATTCCGC GGTGGCCCTT GCCGTTATAT CGACCAAATG
GGTTTAGATA ACTACTTGGC ACTATGTGAA AAATATGCGC ACCTTGGCAA AGCCTATGAA
GCCCCGCAAA AGATTCGCGA CATGGCAGCA GCAGGCGAGA CCTTTTACGC AACCGCGTAA
 
Protein sequence
MVYQGNRITV TMLEDGIANM QYNAENESVN KFDTETNKQF AEVVNALEKA DDVKGLIVTS 
SKGVFIAGAD ITEFVASFKQ SEEEIKDWVI NINDAFNRFE DLPFPKVAAI NGAALGGGCE
MTLVCEYRVM SDKAIIGLPE TQLGIFPGFG GTVRSTRVIG IDNALELIAT GAPKKALDAL
KLGLVDATVA ADDLQDAAID LVKKCISGEL DWKAKREEKL VAVKLNQLEQ AMAFNSAKGM
IFAKANPKQY PAPALAIAAI EKHVNLPRDK AIEVEAAGFA KAAKTPQAES LVGLFLSDQL
VKKLAKQHSK KAHEINEAAV LGAGIMGGGI AYQAASKGLP IIMKDIKSEQ LDLGMGEASK
LLGKMVDRGK MTPAKMGETL SRIRPTLNYG DFAETDIVIE AVVENPNVKR AVLKEVEGLV
KDDCILASNT STISITFLAE ALERPENFVG MHFFNPVHRM PLVEVIRGEK SSEEAIATTV
ALASKMGKVP VVVNDCPGFL VNRVLFPYFG AFDLLLKQGA DFAHVDKVME KFGWPMGPAY
LIDVVGLDTG VHGAEVMAEG FPDRMKPDYK GAIELLYENK RLGQKNGVGF YKYEMDKRGK
PKKVADEATY ELLKTTTDSE KQTFDDQAII DRTMLAFCNE TVRCLEDNIV STPSEADMAM
IMGVGFPPFR GGPCRYIDQM GLDNYLALCE KYAHLGKAYE APQKIRDMAA AGETFYATA