| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1933 |
|---|
| Symbol | fadA |
|---|
| ID | 3515903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 2381258 |
|---|
| End bp | 2382430 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637670631 |
|---|
| Product | 3-ketoacyl-CoA thiolase |
|---|
| Protein accession | YP_265215 |
|---|
| Protein GI | 71066488 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.132677 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.226024 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTT TAAGTCCAAA AGACGTGGTC ATCGTAGATG GCGTACGCTC AGCAATGGGT
AAAACCAAAA ACGGTATGTT CCGTCATGTC CGCGCTGATA GCATGTCTGC TGAATTGGTA
CGTGCATTGG TTGAACGTAA TGACTTTGAT CCACGTGACG TTGAAGACAT TATCTGGGGC
TGTGTTAACC AGACGCTAGA GCAAGGTTTA AACATCGGTC GTAACATCGG TCTGCTGGCT
GGTATCCCAA AGACAGCGGG CGGTCAGACC GTTAATCGTC TATGTGGTTC TTCTATGCAG
GCGCTACACA CTGCTGCTGC CCAAATTATG ACAGGCCAAG GTGATGTGTT CATCATCGGT
GGTGTTGAGC ATATGGGTCA CGTCGGCATG ATGCATGGCA TTGATCTCAA CCCTGAAGCG
TCAAAGCACT ACGCAAAAGC CTCAAACATG ATGGGCTTGA CCGCTGAAAT GCTGGGTCGT
ATGAATAACA TTACCCGTGA AGAGCAGGAT GCTTTTGGTC TTGAGTCACA TCGCCGTGCG
TGGGCTGCGA CTACTGAAGG TCGTTTTGAC AATGAAATCA TCGGTATCGA AGGTCATGAT
GCGGCTGGTC GCTTGCAACT GTGTACCGTT GATGAAGTGA TTCGTCCAGA TGCGACGATG
GAGCAAATGC AAAAGCTACG TCCAGCCTTT GATCCAGTAA GTGGTACGGT GACTGCAGCT
ACCTCATCTG CATTATCTGA TGGTGCGTCA GCGATGCTCA TCATGAGCGC GCAAAAAGCC
AAAGAGTTAG GTCTAAAGCC ACGTGCTCGT ATTCGTAGTA TGGCAGTCGC TGGTTGTGAT
GCGGCTATCA TGGGTTACGG TCCTGTACCT GCCACGCAAA AAGCGCTTAA ACGTGCTGGC
ATGAGCATCG AAGATATGCA AACGATCGAG CTAAATGAAG CGTTCGCCGC GCAAGGTTTG
TCGGTACTTA AAGCTTTGAA CCTGACTGAC AAGCAAGACA TCGTCAACAT CAACGGTGGT
GCGATTGCGC TAGGTCATCC ACTAGGCTGT TCAGGTGCTC GTATCACCGT GACATTGCTT
AACGCCATGG AGCAGTCAGA TACTGAAATC GGTCTAGCGA CGATGTGTAT CGGTCTTGGT
CAAGGTATCT CGACTATTAT TGAGCGTGTT TAA
|
|---|
| Protein sequence | MTILSPKDVV IVDGVRSAMG KTKNGMFRHV RADSMSAELV RALVERNDFD PRDVEDIIWG
CVNQTLEQGL NIGRNIGLLA GIPKTAGGQT VNRLCGSSMQ ALHTAAAQIM TGQGDVFIIG
GVEHMGHVGM MHGIDLNPEA SKHYAKASNM MGLTAEMLGR MNNITREEQD AFGLESHRRA
WAATTEGRFD NEIIGIEGHD AAGRLQLCTV DEVIRPDATM EQMQKLRPAF DPVSGTVTAA
TSSALSDGAS AMLIMSAQKA KELGLKPRAR IRSMAVAGCD AAIMGYGPVP ATQKALKRAG
MSIEDMQTIE LNEAFAAQGL SVLKALNLTD KQDIVNINGG AIALGHPLGC SGARITVTLL
NAMEQSDTEI GLATMCIGLG QGISTIIERV
|
|---|
| |