| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1600 |
|---|
| Symbol | |
|---|
| ID | 3515565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 1957402 |
|---|
| End bp | 1958946 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637670293 |
|---|
| Product | OMF family outer membrane efflux protein |
|---|
| Protein accession | YP_264882 |
|---|
| Protein GI | 71066155 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00101188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TATCACACCA AAAAACTCTA TCTTATAGCT ATATACCATA CAGTCACATA
ACAATCTTAG TTGCGACGAT GTGTTTTGCT ATAAATACGC AAGCTGCAGT AAAAGATATG
CAAATCAATA CCTTGATTAC ATATGCAGTT CAAACTCATC CTTTAGTTGG ATCAGCTCGT
GCCAGTCAAC AGGCAACTAC TGAAGGTATC AATGCGGCAA AATTGAATCT GCTACCAACC
CCAAGCGTAA GCTCGGGCTA TGATAGAGAC AATGATTTTG TCTCACAAGT CACCATTCGC
CAGCCATTAT GGACAGGCGG TAAGCTCACT GCTGATGTCA ATCAAGCCAT ATTTGATGAC
AAAGCTGCAG TCGAGTATAT TTATGAGCAG CAAAATCTTG TCGCAAAGAC CGCTATTGAT
GCTTGGCAGG CTTATATCCA AGCCATTGCC AAACAAAGCG TTCATATCGA TGGTTTAAAA
GAGCTCAATG AATTTGAAGC CATGATGCAG CGCCGTGTCA ATCAAGGTGT CTCTGCTCGT
ATCGAGCTTG ATTTAGTGAC CAACCGTATT TTGCAAGAGC AAAATGCCTA TCAAGCGGCA
GTGGAGCAGC AACGCATCGC GGCTGCGCGC CTTGAGCAAA TTGTTGGCGA GCCTCTGTCA
CGTAATAGTG TGATGAGCTT ACCTAATATC AAAGCACTCG TAAATCAAGC CAAACAACAA
TCTACCAATT TTGAGCGCAT GGCATTTGAG CAAGCCGGTT TTTATAATCC CACCGTGGTA
AAAGAGCATT TTCAAATTGA GTCGGCAAAA CAAGGTGTTG AAGCCCAACA AGCCTCTAAA
TATCCTACCG TTTATGCTCA ATACGAGCAC GCTTACTATC ACGAAGACAA CGAAAATAAA
GGCAAGTTCT CATTAGGATT AAGTTACGCG CCTGGCGCAG GGTTTTCTAA CCTAGCGTTG
GCACGTGCCT CGCAGGCGCA AGTGAGTAGC TTGGTACAGA CCCAAGAAGC GGCACGTCGA
CGCGTCATAG AGAATGTTCA GGTGCAGTAT CAGCAGTTTG TTAGTGCTAG AGATCGCGAA
ACCTCGTTAG TGGCAGCGGT AGCGGGGGCG CAGATTGTCG TCAGCTCTTA TCGTCGTCAG
TTTATTGCTG GACGTAAATC ATGGTTAGAG GTGCTAAATG CCGTTCGTGA GCACAATGAA
TATCAAGTAC AGCTAGTGCA GACGCGAGCA GATATGTTAG GGGCGTTTTA TCGTCTCCAA
GTAGATTTTG GCAGTATGCC GTGGCAACAG TATGGACACA ATCGTGAGCC AGTGACATTA
TTTAAGCCAT TGGATCCAGT AAAAAAGTGG ATCAATAATC AAGAAGTAAA AAAATCCGCC
AAGAGCATGG GTTATGTACC GGTGGTAGAA GAGGATTATT TGGAAATAAG ATTACCTGAC
AATGTAGAAG ACAGTCTTAA TAATGGTAAT TTTATTATGC TAAACGAAGA TTATAGTGTC
ACGCCCATCG TTGATCAGAA TACTATGATA GAACTGAAGA AGTGA
|
|---|
| Protein sequence | MKKLSHQKTL SYSYIPYSHI TILVATMCFA INTQAAVKDM QINTLITYAV QTHPLVGSAR
ASQQATTEGI NAAKLNLLPT PSVSSGYDRD NDFVSQVTIR QPLWTGGKLT ADVNQAIFDD
KAAVEYIYEQ QNLVAKTAID AWQAYIQAIA KQSVHIDGLK ELNEFEAMMQ RRVNQGVSAR
IELDLVTNRI LQEQNAYQAA VEQQRIAAAR LEQIVGEPLS RNSVMSLPNI KALVNQAKQQ
STNFERMAFE QAGFYNPTVV KEHFQIESAK QGVEAQQASK YPTVYAQYEH AYYHEDNENK
GKFSLGLSYA PGAGFSNLAL ARASQAQVSS LVQTQEAARR RVIENVQVQY QQFVSARDRE
TSLVAAVAGA QIVVSSYRRQ FIAGRKSWLE VLNAVREHNE YQVQLVQTRA DMLGAFYRLQ
VDFGSMPWQQ YGHNREPVTL FKPLDPVKKW INNQEVKKSA KSMGYVPVVE EDYLEIRLPD
NVEDSLNNGN FIMLNEDYSV TPIVDQNTMI ELKK
|
|---|
| |