| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1576 |
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| Symbol | acrB |
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| ID | 3515540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | + |
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| Start bp | 1928426 |
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| End bp | 1931653 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637670268 |
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| Product | RND superfmily multidrug/dye/detergent efflux pump AcrB |
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| Protein accession | YP_264858 |
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| Protein GI | 71066131 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00327215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACGTT TTTTTATTAA TCGCCCTATT TTTGCTTGGG TGCTGGCTGT TTTGGTCATG
CTCATCGGGG TGATATCGGT TCTTAACCTA CCGATTGAAC AGTATCCACG TATTGCACCA
CCGACGATTT CGGTCAGTGC AAGCTACCCT GGTGCTAACG CGCAAACCGT TGAAAATTCA
GTAATACAGA TTATTGAGCA GCGCATGAAA GGGCTTGATG GTCTGATGTA TATGTCATCA
TCGAGCTCTT CAAATGGTAG TGCCTCAGTG ACGCTTACCT TTGAGAACGG TACTGATTCT
GATACTGCTC AGGTACAAGT ACAGAACAAA CTGCAAGCCG CGATGAGCTC GTTACCTGAA
TCGGTACAGC GTCAAGGCGT TAACGTTAAT AAATCATCTA GCAGCTTTAT GATGGTGCAG
GCGTTCATCT CCGAAGATGG CAATATGGAT CGATCAGATA TTGGCGATTA TATTAACTCC
AATGTCCTCG ATGCGATCAG TCGTGTTGAA GGTGTGGGTG AGGTTCAAGT CTTTGGCTCT
ACCTATGCGA TGCGTGTTTG GCTTGACCCT TCACGCCTAC GTAGCTACAA CATGGTGCCA
TCTGATGTCG TCAATGCGAT ACGAGCACAG AACACTCAGG TATCTGCTGG TCAATTAGGA
CAAGCACCTG CTGACACTGA CCAACAGGTT ATCAACGCTA CTGTTACGGT GCAAAGCTAT
TTACAAACGC CTGAAGAATT TCAAAACATT CTGTTAAAAA CTGACACCGC TGGTGCGCAG
GTACGTTTAG GCGATGTGGC GGATGTCGAA ATCGGCAGTG AGAATTATAG CGTTGTGTCT
TTATATAATG GACAAGAAGC GGCTGGTTTG GGTATTTCGC TTGCTGCTGG TGCCAACGCA
CTTGAAACTC GTGAGGCAGT TGGTGTGCGT ATGGCAGAGC TGGAAAAGAA TTTTCCAGCT
GGTCTGACAT CAGTGGTTCC TTATGACACC ACACCATTTG TTCGTCTATC TATCGAACAA
GTCGTTATGA CCCTCATTGA GGCGATCGTA TTAGTATTTA TCGTTATGTT CCTTTTCTTA
CAGAACTGGC GCGCGACTAT CATTCCAACG CTTGCCGTAC CTGTTGTTCT ATTGGGTACG
TTTGGGGTGC TGTATATTGC TGGCTTTAGT ATCAACGTAT TGACCATGTT TGCTATGGTG
CTCTCCATTG GTCTATTGGT CGATGATGCA ATCGTTGTCG TAGAGAACGT TGAGCGTATA
TTAGAAGAAG ATCCTCACAT TTCTATTAAA GACGCGACCG TTCAATCGAT GGGTGAAATC
AGTAAGATCG TTATTGGTAT TGCGCTTATT TTATCCGCTG TATTCATACC GATGGCTTTC
TTTGGCGGCT CAACAGGCGT GATTTACCGT CAGTTCTCTA TTACTTTGAT TACCAGCATG
GTGTTATCAG CCATGGTCGC GCTTGTTTTC ACCCCTGCCC TATGTGTGAC ATTGCTAAAA
CGTGGCAAAA GTCATGAAAA AGGCAATAGC GAAAATCAAA AAGGCTTCTT TGGTTGGTTT
AACCGCTCTT TTACCAAAAC CAGTCAATCT TATGAAAAAT TTATTGGTAA AAGCTTCCGT
TTTAAATGGT TATATCTGAT TGTCTATGCC GCCATTATCG GTATTATGGC AGTGGTGTTC
TTGCGTATTC CGGGCTCATT TTTACCAGAA GAAGATCAAG GTATTATGTT TACCTTGGTT
CAGCTTCCTG CCGGCTCTAC ACTAGATGAG ACACAAGACG TACTGGATAA AATTAGAAAC
TATTACGACA CTCAAGAGAG CGATAACATT GCTTCTGTCT TTACCATTGC AGGCTTTAGT
TTTGCTGGTC AAGGTCAAAA TATGGGTCTG GCATTTGTAC GTTTGTCAGA TTGGGAGGAA
CGTTCTGGTG ATGAAAACAC AGCCCAAGCC GTTGCTGGTC GAGCAATGGG TTATTTCTTT
ACTCAGTTAA ATGAAGCGCA AGTATTCGCC ATTGTACCCC CAGCTATTAC TGAGCTTGGT
AATGCCAGTG GTTTTAATTT AATGCTTCAA GATAGTGGCA ACCTTGGACA CGATGGGTTA
CTTGAAGCCC GTAATATGCT CTTAGGTATG GCAGCACAGA ATGAACAAGT TGCTGGTGTG
CGTCCTAACG GTCAAGAAGA TTCGCCACAA CTTAAAATTG ATATCAACCA AGAACAAGCT
GCTGCTTATG GCTTGTCGTT AAGTAATATC AACAGCGTCA TCTCAACAGC GTGGGGCTCA
AGTTACGTTA ATGACTTCGT CGATCGTGGT CGTATTAAAC GCGTCTATGT ACAAGGTGAG
GCAAGCAGCC GCACCAACCC TGATGACATT GGTAAATGGT ATGTACGAAA TGACATGAAC
GATATGATTT CGTTCGATGC ATTCTCTAGC AGTGAGTGGC AGTCAGGCTC ACCACGTCTC
ACTCGCTACA ACAGCTTACC GTCAATGAAT ATCCAAGGTA GCGCAGCACC GGGTTTAAGT
ACTGGTGAGG CAATGAGTTC TATGGAAGCC ATGATAGATA AGTTACCTGA AGGCATCAGT
TACGAGTGGA CAGGCATGTC ATTGGAAGAG CAAAAGTCAG GTGCACAAGC GCCTATACTT
TATGCGCTGT CAATCCTAGT CGTGTTCTTG TGCTTGGCGG CTCTATATGA AAGCTGGTCT
ATACCCTTCT CTGTCCTATT GGTCATTCCA CTTGGGGTAT TGGGTGCCGT GATATTTACT
TGGCTACGCG GTTTTGCCAA TGATATTTAC TTGCAAGTTG GTCTACTTAC GGTCGTTGGT
CTATCGGCCA AAAATGCCAT CTTGATTATT GAGTTTGCCA AAGAGCGCCA AGAGGCAGGT
TATAGTCTCA CAGAGGCCGT CATGACAGCA GCGCGTCAAC GCTTACGTCC AATTATTATG
ACCTCTCTTG CCTTTGGACT AGGTGTTGTG CCATTATTCT TAGCAAACGG TCCAGGTTCA
GGCAGTCAAA ATGCTATCGG TACCAGTGTT ATCGGTGGTG TTATAACTGC CACACTCTTA
GGCATCTTCT TTATTCCAAT GTTTTACATC TGGGTACGTA GTGCGTTCCC GCACAAATAC
GAGAACAATA AGCCAAATGA TAAAGATGAT AGCAACGGTA CGCCTGACTC GCACAACCCA
ATGCCTTCTG ATAATGATCA GCCTGCAAGC CTTGGAGACA ATACATAA
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| Protein sequence | MSRFFINRPI FAWVLAVLVM LIGVISVLNL PIEQYPRIAP PTISVSASYP GANAQTVENS
VIQIIEQRMK GLDGLMYMSS SSSSNGSASV TLTFENGTDS DTAQVQVQNK LQAAMSSLPE
SVQRQGVNVN KSSSSFMMVQ AFISEDGNMD RSDIGDYINS NVLDAISRVE GVGEVQVFGS
TYAMRVWLDP SRLRSYNMVP SDVVNAIRAQ NTQVSAGQLG QAPADTDQQV INATVTVQSY
LQTPEEFQNI LLKTDTAGAQ VRLGDVADVE IGSENYSVVS LYNGQEAAGL GISLAAGANA
LETREAVGVR MAELEKNFPA GLTSVVPYDT TPFVRLSIEQ VVMTLIEAIV LVFIVMFLFL
QNWRATIIPT LAVPVVLLGT FGVLYIAGFS INVLTMFAMV LSIGLLVDDA IVVVENVERI
LEEDPHISIK DATVQSMGEI SKIVIGIALI LSAVFIPMAF FGGSTGVIYR QFSITLITSM
VLSAMVALVF TPALCVTLLK RGKSHEKGNS ENQKGFFGWF NRSFTKTSQS YEKFIGKSFR
FKWLYLIVYA AIIGIMAVVF LRIPGSFLPE EDQGIMFTLV QLPAGSTLDE TQDVLDKIRN
YYDTQESDNI ASVFTIAGFS FAGQGQNMGL AFVRLSDWEE RSGDENTAQA VAGRAMGYFF
TQLNEAQVFA IVPPAITELG NASGFNLMLQ DSGNLGHDGL LEARNMLLGM AAQNEQVAGV
RPNGQEDSPQ LKIDINQEQA AAYGLSLSNI NSVISTAWGS SYVNDFVDRG RIKRVYVQGE
ASSRTNPDDI GKWYVRNDMN DMISFDAFSS SEWQSGSPRL TRYNSLPSMN IQGSAAPGLS
TGEAMSSMEA MIDKLPEGIS YEWTGMSLEE QKSGAQAPIL YALSILVVFL CLAALYESWS
IPFSVLLVIP LGVLGAVIFT WLRGFANDIY LQVGLLTVVG LSAKNAILII EFAKERQEAG
YSLTEAVMTA ARQRLRPIIM TSLAFGLGVV PLFLANGPGS GSQNAIGTSV IGGVITATLL
GIFFIPMFYI WVRSAFPHKY ENNKPNDKDD SNGTPDSHNP MPSDNDQPAS LGDNT
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