| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1126 |
|---|
| Symbol | recD |
|---|
| ID | 3514824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 1340502 |
|---|
| End bp | 1342706 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637669814 |
|---|
| Product | exonuclease V, alpha subunit |
|---|
| Protein accession | YP_264411 |
|---|
| Protein GI | 71065684 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit
[TIGR01448] helicase, putative, RecD/TraA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00308131 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.011484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACA ATAACAATAA GAGCAGAGCG GCCGTTAGCT TACAAGAGAG TTGGGCTAGT
AACATCAGTG ATTATATTTT GCTTCGCCGT CAGCAAACGT ATTTGGCGTA TAACGTGACT
GACGCAAAGG CTAACTTTGA TAGCAAACCA ATCGATCAGA GGGAACAAAA TAGCTTATTT
ACGGCCTTAT TCGTTATGTT GGCCAATCAT TTGGAAGAGG GGCACACAGT CTTAACTGTT
GAGGTAGCTG AGCATGAACT TTCACTCCAA GGTCAAATCA ATGGCGAGCT AGTGACACTA
TATGCTTGGC AGCAGCAATT ATTAGAGATG CTAGCAACGC CAATTCTAGC ACTCATTGAC
ACTCAGGTAG ATACGCACCA AGAGGATGAC TCTACAGCTG ATCCATCATT ATTTGGCTTG
CTAGACACCA TATTTGGCCA GCAAGCTCAG CTATGGGCGC AGCTGGTACT CACCAATCAT
GAAAAAGAGA TACTCATTAA ACGTTTTGAT ACGGTTGCTG CGCTTTATCA GCTAGTGAAA
AACACGAATT TAAACTCCTT CATTCAGTCC ATTCATGAGC ATGCTTTATT CGTTGAGGTT
AATTCTGATG TTAATAATAA CGAAAATAAA AATAGCCTAA GCAAAAATAA TAAACCTATT
ATATATCAAA TAACTAACAA CAAAAACACC ATTAAGCCAA AAGTGTCACT GACTTTTTGG
CTGCATCGCG CATGGCAAGC AGAGTTCAAC TTAGCACAGC GTATCAATAA TATTTTAGAC
CAGAAAATAA AACCTCTAGA AATATCGATA CCCAAAAATC TAAATGAGCA GCAGGTAATG
GCCATTAATG TGGCTAATAA CAATGCATTC AGTATGATTA CCGGTGGCCC AGGCACAGGT
AAGACCTATA CTGTTGCTCA GTTAGTGATT GCACTGCAAC AAGCTGCAGA GAGCGGGGCT
GATAAGCATG AAGATATTAG ATTCAGTACG GACAGTGCCA GCCTAGCAAT AGCAGCACCG
ACTGGTAAGG CTGCACAGCG AATGCAGGAG TCTTTACAAG CGGCTCTAGA CGCAGCGAAT
GTGGAGCTAC AACTACAAGA AGCCAAAACC ATTCATCGTT TGCTAGGTAT TGGCCGAACG
GGTAGACCTC GTTACGATGC AAATAATCCA CTCGGCGAAG ATATTATCAT CGTTGATGAG
GCATCTATGC TAGGGGTTGA ACTGGCTAAT TACCTTGTGA GTGCAGTGAA ACCAGGCGCA
AGGCTTATAT TGTTAGGGGA TGCTAACCAG TTAGCGGCGG TAGATGCAGG GGCAGTATTA
GCTGACTTGT GCCGCATTCC ATTGCTACAA CCCATACATG CAGAGCTAAC AGAGAGTCGC
CGATTTAGCG CAGAATCAGG TATTGGTAAG CTGGCCTATC AAATCAATCA GGCAGATGCA
GATACTCAGG CTATTTGGCA GTTATTAAAA CAGGACGTCG CGCTGAGTTT TCAGTATGTA
AATGCATTGC AAGCAGAGAT AACTATAGGT AATAAGATAC AAAATAGCCT AAGTAATAAT
AAGATTATTT CAAACCTCAC TCTAAACTAC CAAAAATATA TAAATAAAAT TAAGTTGCTA
ATAGAAAATC CAATAGAAAA ATCCGTGCCA AAAGCGGTAA AAAATACAAC TGCTTCATTA
ATGCAAACGT TTAACCAGTT TAGAATTTTA AGTGCTGGCC ATAATGGCGA GTGGGGGGAT
CGCTATATTA ACAAACATCT GACTCAGTGG CATCTTGCTG AGCTAAAACT ACCCTTAGGT
CAAAACACAT GGTTCCATGG TCGTCCCGTT ATGGTTCTAC AAAACAACTA TGAGCTGGGA
TTGTTTAATG GTGATATCGG TTTTTGCCTA CAAACAGGAG ATGAAAGAAG TCGCTTAGAA
GTGTTTTTTG AGAATAAAGC GCAGGGGATT GCCGTCAACC TATTAAATGA AGAGGTCATT
GCCACCGCTT ATGCGATGAC CATTCACAAG TCTCAAGGGT CTGAGTTTGA TCATGTGGCC
ATTACCTTTG ATAATAGTCA TGCCAGGTTG CTGAGTAAAG AGCTTATTTA TACAGCGGTG
ACACGTGCTA AAAAACAGGT AAGCATATAT AGCACAAGAC ACGCTTTCGA AAAGGCCATT
CAGACACCGA CTGAGCGCCA TACGGGTTTG GCGCTACAGT TTTAG
|
|---|
| Protein sequence | MSNNNNKSRA AVSLQESWAS NISDYILLRR QQTYLAYNVT DAKANFDSKP IDQREQNSLF
TALFVMLANH LEEGHTVLTV EVAEHELSLQ GQINGELVTL YAWQQQLLEM LATPILALID
TQVDTHQEDD STADPSLFGL LDTIFGQQAQ LWAQLVLTNH EKEILIKRFD TVAALYQLVK
NTNLNSFIQS IHEHALFVEV NSDVNNNENK NSLSKNNKPI IYQITNNKNT IKPKVSLTFW
LHRAWQAEFN LAQRINNILD QKIKPLEISI PKNLNEQQVM AINVANNNAF SMITGGPGTG
KTYTVAQLVI ALQQAAESGA DKHEDIRFST DSASLAIAAP TGKAAQRMQE SLQAALDAAN
VELQLQEAKT IHRLLGIGRT GRPRYDANNP LGEDIIIVDE ASMLGVELAN YLVSAVKPGA
RLILLGDANQ LAAVDAGAVL ADLCRIPLLQ PIHAELTESR RFSAESGIGK LAYQINQADA
DTQAIWQLLK QDVALSFQYV NALQAEITIG NKIQNSLSNN KIISNLTLNY QKYINKIKLL
IENPIEKSVP KAVKNTTASL MQTFNQFRIL SAGHNGEWGD RYINKHLTQW HLAELKLPLG
QNTWFHGRPV MVLQNNYELG LFNGDIGFCL QTGDERSRLE VFFENKAQGI AVNLLNEEVI
ATAYAMTIHK SQGSEFDHVA ITFDNSHARL LSKELIYTAV TRAKKQVSIY STRHAFEKAI
QTPTERHTGL ALQF
|
|---|
| |