Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyc_1063 |
Symbol | sbcC |
ID | 3514949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter arcticus 273-4 |
Kingdom | Bacteria |
Replicon accession | NC_007204 |
Strand | - |
Start bp | 1267100 |
End bp | 1271023 |
Gene Length | 3924 bp |
Protein Length | 1307 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637669752 |
Product | exonuclease SbcCD, C subunit |
Protein accession | YP_264349 |
Protein GI | 71065622 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTAA TTGAATTAAG ACTAAAAAAC CTCAACTCCT TAAAAGGCGA ATGGCACATT GATTTTAGTG ACGCCGCTTT TCTTAACGAA GGTATCTTTG CCATTACGGG GCAAACAGGC GCTGGCAAGA CCACCATTTT GGACGCTATT TGTTTGGCGC TCTACAGCCA AACGCCACGA CTCGGTGATA TTACTGGCTC TACCAATGAG ATCATGACCC AAGGTACAGG AGAGTGCTCG GCAGAAGTTA TTATCGAGAT TGACGCCAAG CGATATCAGT GTTCATGGTA CCAACATCGT GCCCACAAAA AAGCCAAAGG CAACTTATTA CCGATTAAGC ACGAGATTAG CGAGGTCAAG TCTGGCAAGA TTTTAGAAGA AAAAAAATCC AAAACCTCTG CTTATATCCA AGCGCTTATT GGCATGGATT TTAGCCAATT TACCCGCTCC ATCATGCTGG CGCAAGGCAG TTTTGCTGCG TTTTTAAAAT CTGATATCGG TGATAGAGCG GCGATTTTAG AGAAAATAAC GGGTACTGCT ATCTATGCCA AAATCTCACT CAATGTTCAT GAGAAAAAAC GCTTTGAAGA AGATGTGCTC AGTAAATTGC AGGCAGGCGT TGATGGCTTA TCCTTGCTAA GTATTGAAGA CGAAAATCTG CAGGCAGCCG AGCTAAAAGC ATTAAATCAA CAGCAAAGCA CACAGCGACA AAGCTTTAAG ACATTAAGTG AGCAGCTGCA ATGGCTAAAT AACGTACAAC AGCTGCAAAA TAACCTATCT ATTTATCAAA GCGAGTTTGC AACCGCCCAG CAAGCGCAGC AAGCCTTTGT TCCAGAAGCC AAGCGTTTAA GCATTGCCAA CAAGGCATTA GAGATTGATA GCCAGTTTCG CGAGCTTAGC TATAGTCGTG AGACGGTAAA GAAGCTAGAT GTTGAACAAC AGAGTTTGCT GAGCCAAATC CCTGCCCAGC AACAAGCGCT GGCACAAGCT GCATGCCATT TAGACGATGC CAACACGCTA GGAAAACAAG CCGCAGACAA CCTTCAAACA AACTTGCCTG TCATCGCACA GGTGCGCGAA TTAGATCATA ATATCAGACA GCAGTCTCAG TCCTTAGTGG AATACAACCA GCGTAAGGAC TTATTGGTAG GTAATGCACA GATATTATGC CAAGAAATAC AAAACCATCA GCAAACTGCC GATCGCACCA AAACTCAGCT AAATAATATC GACCAGTACT TTAGCAGCTA CCCAGAGCTG AGTGACCTTG ATACCGATAT GACAATCTTT GATAGTAGCT GTCAACGATT AAGGGCGCTA CTAGAAGATA ACTCTGATTT TTCAGCAGCT AGAATTAGCC AACATAGCCT GGCCTGCCAG CTACAAGCTG ATTTTGAGAT ATTATCCAAA CAGCAAAACA CTGATCTTTC ATTGATAGCG CAGCGGCGCG AGCAACTGCT AAATCTACAG CAGCAGCAAG CAGTAGTCAC TCAAAACCAG CCGCTTGCTA TTATGCGCGG TGAGCAAGAG CAAATCGAGC ACATCAGCGC ACAGATTGAG CAAGTGAGAT TTAAGATTAA ACAACGGTTT GAGCTGACCC GTCAAATCCA TAAAATCAAT CTCGCGCTAC CGGTATTGAA TCAGGAACTG ACGGTCTTAG ACGACTTAAT TGCCACTCAT CGCGTAGATA TTCAGAGCAC GAAGCTTAAA AAACACGACA AGCAGACGCA CCTTGCTCTA TTGCAAAAAG TCGCAAGGCT TGAAGATTAC ATCGTCGAGC TCAAAGATGG CACACCCTGC CCGCTGTGCG GCGCGCATGA GCACCCTTAT GGTCAACATC ATCCGCTATT AGATGGTCAG ATTGACAATA AACAAGCGTT GTCGCTGACG CAGCAGACCC AGCAGCAAAT ATCTGAGCTT GAGACGCTCA TTGAGCATCT CGAACAAGCA TTATCTAAAC ATCATATCGA CCATGCTACT AAGAATGAAG CCATTAACCA TCAACAGCAG CAGTTAGCCC CGTTACAGCA GCAGTGTGAG ATGTTGGGCA AAGACATTCA AGATAGCCTG CTTTTACTTT TTGACGCCAA TAAAAATCAT TCCAAAGCGA TTGCAGGGAG TGTCCATCCG CTTTATCAAC TGAGTGAAGA TATAAATAAA CCTGACATTG ATAGTAATAG TGATATTGAA AGCACTTTAT CTTTACTAGA CAGCGCCAAA CAAAAGCTAC TCGAGCAAAA GCAGTCTCTT AAAGACCTAT TAATTCAACA TGATGACTTA ACGGCAAGCA TATCAGAGCT AAATATTGCT ATAAAGAGTG ATGAAAATCA GCAGCAGGTA CTGATGAGCA AGTTAAATAA TCTGACGACG GATATCAAGC TACACTCGCA GAAAGCAGGG ACCATTGAGG ATAAGATAGC CGCCAACTTT TTGGCATTAG CCGCTATTAC TAGCAGTATT TTATCATTGG CAGATAAGTA TCCGGCGGAT AGCTATAGAG AATATTTGAG TATTGATTTT CAAAGAACAG ACATTCAAAG CGCACTTAAG CAATTGGACG CTAGTATTGA TGAGCAAACC ATACTAGATA GCAGCGACTA TGAGCGTCAT ATTAATAGAT TACGTCAACA ACGCAGCATG CTAAGCCAGC TAAAAAAGCA TTTTAATGAG CAAAAAAATA GCCAGCAACA GCTAAGCAAT ACATTGAGTA CGGTGCGCGC TCAAATTGAC ACCAAACAAG CTCAGCTCAC CTCTGATGAA AGCGCTCTAA AAAGACTCGA ACACTTGATA GCGGATAAAA ATGTCGCTCT TGAGCAGGTC AAGAGCGACA GGACTGCAAT TTTTGCAGAC AAAAACACAG AGTCTGAAGA CACACTACTG CGCAGCGCAG TCGATGACGC AAAAGCCAAA CAGGCAAATG CTCAAAGACA GTTAGACAGC ACGCAGCAAG TATTAGCGCA ATTGCAAAGC AGACAACGAC AGATATTGGC AGCATTGCAG TCTGCTACGA CAGCACTGAA TACGCAACAA GCTGTATTTC TGGAGCATCT AGAAGCGGCG CAGTTTATGG ATGAAGATGC TTTTATCCGT GCACGCCTGC CTAAAGAAGA GCGTGATGCT TTACATCTCC GTAAACTTGC GATTGATAGT GCCTTGCAGC AGGCAAAGTC ACAGTTAGAT AGCACCCAGC AATCATTAGA GCAGAACCTG TCTCTTGCTA TGACAAATGC CAGCCAAGAA ACGATTGCTG CCCAACATCA GCACATTCAG ATGGAGATAG ATCAGCTCAG CCAACAGATT GGTGCTATTG TTCAAAAGCT CAAAGACAAT GAGAACCAAA AAGGTCAACG AGCAGCCCAA CTTACCGCCA TCAATGTGCA AAAAGAAAAA TTAAAAATTT GGCAGCAGCT GCATATTTTA ATTGGTTCAG CGGATGGTAA GAAATATCGC ACCTTTGCAC AAGGCTTAAC CTTTGAAGTT ATGATTAGCC ATGCCAATAG CCAATTACAA AAGATGAGTG ACCGCTATCT GCTGATTCAT GATGACAGCA ATCCGCTTGA GCTTAATGTC ATTGATAACT ATCAGGGCGG CGATATTCGT AGTACCAAAA ACTTATCCGG CGGCGAAGGC TTTATCATCA GTCTGGCGCT TGCCCTTGGA TTGTCGCAAA TGGCCAGTCA CAATATCCGT GTGGATTCGC TGTTTTTGGA TGAAGGTTTT GGCACGCTTG ATGAAGAGTC GTTGGATATT GCTCTAGATA CCTTGACTGG CTTGCAACAA GAAGGGAAAT TGATTGGTAT AATCTCTCAC GTACAGGCGT TAAAAGATCG TATCTTGACC CAAATAAAGG TTGAAAAAAT ATCTGGCGGC TTTAGCCAAA TCAGCGGTCA AGGGTGTCGG CGTATTGTGA ATGACAAAGT ATAA
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Protein sequence | MRLIELRLKN LNSLKGEWHI DFSDAAFLNE GIFAITGQTG AGKTTILDAI CLALYSQTPR LGDITGSTNE IMTQGTGECS AEVIIEIDAK RYQCSWYQHR AHKKAKGNLL PIKHEISEVK SGKILEEKKS KTSAYIQALI GMDFSQFTRS IMLAQGSFAA FLKSDIGDRA AILEKITGTA IYAKISLNVH EKKRFEEDVL SKLQAGVDGL SLLSIEDENL QAAELKALNQ QQSTQRQSFK TLSEQLQWLN NVQQLQNNLS IYQSEFATAQ QAQQAFVPEA KRLSIANKAL EIDSQFRELS YSRETVKKLD VEQQSLLSQI PAQQQALAQA ACHLDDANTL GKQAADNLQT NLPVIAQVRE LDHNIRQQSQ SLVEYNQRKD LLVGNAQILC QEIQNHQQTA DRTKTQLNNI DQYFSSYPEL SDLDTDMTIF DSSCQRLRAL LEDNSDFSAA RISQHSLACQ LQADFEILSK QQNTDLSLIA QRREQLLNLQ QQQAVVTQNQ PLAIMRGEQE QIEHISAQIE QVRFKIKQRF ELTRQIHKIN LALPVLNQEL TVLDDLIATH RVDIQSTKLK KHDKQTHLAL LQKVARLEDY IVELKDGTPC PLCGAHEHPY GQHHPLLDGQ IDNKQALSLT QQTQQQISEL ETLIEHLEQA LSKHHIDHAT KNEAINHQQQ QLAPLQQQCE MLGKDIQDSL LLLFDANKNH SKAIAGSVHP LYQLSEDINK PDIDSNSDIE STLSLLDSAK QKLLEQKQSL KDLLIQHDDL TASISELNIA IKSDENQQQV LMSKLNNLTT DIKLHSQKAG TIEDKIAANF LALAAITSSI LSLADKYPAD SYREYLSIDF QRTDIQSALK QLDASIDEQT ILDSSDYERH INRLRQQRSM LSQLKKHFNE QKNSQQQLSN TLSTVRAQID TKQAQLTSDE SALKRLEHLI ADKNVALEQV KSDRTAIFAD KNTESEDTLL RSAVDDAKAK QANAQRQLDS TQQVLAQLQS RQRQILAALQ SATTALNTQQ AVFLEHLEAA QFMDEDAFIR ARLPKEERDA LHLRKLAIDS ALQQAKSQLD STQQSLEQNL SLAMTNASQE TIAAQHQHIQ MEIDQLSQQI GAIVQKLKDN ENQKGQRAAQ LTAINVQKEK LKIWQQLHIL IGSADGKKYR TFAQGLTFEV MISHANSQLQ KMSDRYLLIH DDSNPLELNV IDNYQGGDIR STKNLSGGEG FIISLALALG LSQMASHNIR VDSLFLDEGF GTLDEESLDI ALDTLTGLQQ EGKLIGIISH VQALKDRILT QIKVEKISGG FSQISGQGCR RIVNDKV
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