| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_1002 |
|---|
| Symbol | |
|---|
| ID | 3515002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 1194218 |
|---|
| End bp | 1195735 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637669692 |
|---|
| Product | Mu-like prophage protein |
|---|
| Protein accession | YP_264289 |
|---|
| Protein GI | 71065562 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4383] Mu-like prophage protein gp29 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00291607 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA TGACTACAAA GCCGCGTTAC CGTGTTACAG CAGGTAAGGC GCTAAGCCAA
GAACAAGCGA TTGATTTGCG CGGTAAGATA TTTTACCGAC ACTTGATCCG CACTGACACT
GACGAGATAC TTAAAAAAGC GGGTATCAGT CGCTATGCGC TTAAGACATT GCTGACTGAC
CCGGACATTG ACCAAGCGAT TGACAGACGC GAAGAAGAGT TAAGCAATGC CGCTTATACG
ATCACGCCAA GTGAGGGCAG TGTTGCTGAC TTTGTCTATG AGCAATTAGA CCTGCATCTT
GAGACGATAC TACAAGGCTC GTCGCTGAGT AAGTGGTACG GCTATGATGT GATTGAAATG
CTATGGGGTA AAGATAGCGG TGGGCGTAAT GCAGTCATCT CGATGATGTC TAAACCTATC
CAGTGGTTTG AGCCGTTACC TGCCGGCGAG CTGCAATGGT TTCCAAACGA TGGTAGTGAG
CCGATAATGA TTAGTGATCA AGCTGATTTT TACTATCGCT ATCTATATCA GCAGCATAAG
CCGACGTATC TAAACCCTAA AGGCAAGTCA TTATTAAGCC GTGTTTACTG GCTACATTAC
TTCAAAACCA ACGCCTGGCG CTTTTGGTCT AAGTTTCTGG AGCGCTTCGG TTCGCCATTG
CTTATCGGTA AGACTGATGC AACCAGTGAT GATGACGCGC AGGACTTTGC CAATGCAATG
CTTGCGGCTC ACAACTCAGG TGTCGTGACT ATCGGCATTG ACGAGGATGT GAAAGCGGTA
ACAGCTGGCA GTAATGGCGA GGCGTTTGTT AGCTATGATT CAGTAGTTAA GCAAAGCATT
ACGACTTACT TGCTTGGTCA AACGCTTACC AGTGGCACAG ATAAAGGCGG TACTTATGGC
CAGGGTGTAG TGCACCAAGA GCAACAAGAG ATTATCTTTA GCAGTGACCG TAAGCATGCG
ATTAAAGCCG TTCAGCGGTT TATCGATGTT ATCTGTATAG CCAATGGTTT TGAAATCCCT
GAATTTAAGT GGGTGGCCAA AAAATTCATT GATCAAGAGC AGTTAGACGC TGATAAAAAA
GCGCATGAGA TGGGTGTTCG TTTTACTAAG TCATACTTTG TTGATGAGCA TGGCTATAAC
GAGCAGCATA TCGCTCAAAT GGATTATGGC GATGGCGCTA TTAAGTTGCC GACGTCAGCA
CAAGCCAATC GTTACCCATC GCTAGCCAAA CATAGCTGGG TTCCGTTTAA AGCTGCCGAG
AGTGATGGTG AGTTTACCGA TGAGCAAATG GAGCTTGAGA AAGTCGCAGA TGATGCGCTT
GAATTGAGCG TACAGCCGTT TGATGCTAAT ACTGTACTGT CAGCTATTGC AGACGCTACG
GACATTGATA GCTTACGTGA GGCGCTATTT AATATGGTCG GTGATAGCTT GGCTGAGAGT
GATTTTACAC AGCTAGTTAA TACCGCTATA CAGGTCGCTG ACGTGCATGG TTTTGCTGAT
GAATCGAGTG AGGTGTAA
|
|---|
| Protein sequence | MTDMTTKPRY RVTAGKALSQ EQAIDLRGKI FYRHLIRTDT DEILKKAGIS RYALKTLLTD
PDIDQAIDRR EEELSNAAYT ITPSEGSVAD FVYEQLDLHL ETILQGSSLS KWYGYDVIEM
LWGKDSGGRN AVISMMSKPI QWFEPLPAGE LQWFPNDGSE PIMISDQADF YYRYLYQQHK
PTYLNPKGKS LLSRVYWLHY FKTNAWRFWS KFLERFGSPL LIGKTDATSD DDAQDFANAM
LAAHNSGVVT IGIDEDVKAV TAGSNGEAFV SYDSVVKQSI TTYLLGQTLT SGTDKGGTYG
QGVVHQEQQE IIFSSDRKHA IKAVQRFIDV ICIANGFEIP EFKWVAKKFI DQEQLDADKK
AHEMGVRFTK SYFVDEHGYN EQHIAQMDYG DGAIKLPTSA QANRYPSLAK HSWVPFKAAE
SDGEFTDEQM ELEKVADDAL ELSVQPFDAN TVLSAIADAT DIDSLREALF NMVGDSLAES
DFTQLVNTAI QVADVHGFAD ESSEV
|
|---|
| |