| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0969 |
|---|
| Symbol | btuB |
|---|
| ID | 3514376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | - |
|---|
| Start bp | 1160914 |
|---|
| End bp | 1162851 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637669658 |
|---|
| Product | outer membrane receptor for transport of vitamin B |
|---|
| Protein accession | YP_264256 |
|---|
| Protein GI | 71065529 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.01117 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTAT CACGTTCATC TTCAACCACC TATCTTCGGT TGTGTATTTT AAGCGCATTT
GGCGCATTTG CTATGAGCGC TAACGCCGCT ACTGACGTCA ATATTGTTAG TGATAGCGAT
CTACCACAAG TTGAGCTTGA TAAAATCGTC GTGACCGCGA CGCGTACACC GACTAAGACG
AGTAATGTGA TTGCTCAGAC TCGTGTGATT GATAGCGAAG AATTGCAGCG TTATCAAGGT
CAGACAGTCA CTGATGTATT AAAGAATCAG CCTGGTATCA ATATTGCTCA AAGTGGTGGT
ATGGGAACGA TTAGCAATTT TTATATGCGT GGCTATGACA GCAAGCAAGT CCTTGTACTA
ATAGATGGTA TCCGCTATAG CTCTATTTCT GCAGGAACGT CTTCATTAAA TTTATTACCG
GCTGACCAAA TTGATCGCAT TGAAATTCTA TACGGTGCTT CAGGGTCTAG TATTTATGGT
TCTGACGCTA TGGGCGGTGT TATTCAAATC TTTACCAAGG GCAATATTGT AGAGCAATCT
AATATTTCGA CTAGCGTTGG TTACGGAAGT AATAATCACT ACCAAGTAGG CGTCACAGGT
CAGCTTAAAA ACGATACTTC GTCATTAAGC TTGGGCGTCA GTCGCAACAA AACAGACGGT
TTTAACGCGA TTGCCGATAG CAGTTCTTCC GATTATAATG CTGATGATGA TGGCTTTGAA
TCTACCAATG CTAGTTTAGG CTTGCAGCAT AAGCTTTCAG ACTCTTTAAG TGCAGGGCTA
AGTGCCTTAT ATTCTGACTC TACAACTGAT ATTGACTCTG CAGGTACTCT GTTTCCAAAT
GCCTATTCAG ATCAAAAAAA TGGCAGTGCC AATGCCTTTA TTCAACATCA AACGCCATTG
ACTGTCACTA AGTTCAGCTA TGGTCAAAGT ATCGACAGAC TCACGTCACA TGATAATAAC
TCTATTAATT ATCAACAAGG TAGCCAGTTT GATACCACCC AAGAGCAAGC GCGTTTAGAA
AGTCAAATTA ATGCGCAACC GGGTACGGTG ACTATCGGTG CAGAATGGTT ATCCCAAAAA
CTAGATGCAT CAGATGTTTT AGATTTTTCG GGTTACCCTA ACCCTGCCGT TCAAACTGCT
TATAACCCTG ATGACAGAAC GGTCAAAAGT GCTTTCGTTG GCTATCAACT ATCAGAATCT
TATTATGACT TGCAAGCCAA TTACCGTGTT GATGATAATT CCCAATATGG TAACGAAAGT
ACTTATAATA TAGGCGCTGC TGTACGTCCA TTGGATGGTG TACGAATCGG CGCTAGCTAT
GCGACAGGCT TTCGCGCTCC AACCTTTAAT GATCTATACT ATCCTGGTTA TAGCAACCCA
GATTTGAAGC CTGAAACCAG TAAAAATACT GAACTATTCG TAGAGTACAA TAAAGGAAAT
CAAATTTCAC GCCTTACTGG CTATCATACT GATGTAGAGG ATTTGATTGG CGGTAATACC
AATACTGGTG AGGCAAAAAT CAAAGGGTTA AGCCTTATAT CAGACTGGCG TGTTAATTCG
TTTCTATTTG GTTTAGGTTA TGACTATTTA GATGCCAAAG ACAAAACAGC CAATAGCGCT
AATTATAATA ACGACCTTGT ATATCGTCCT CAAAATAGCG GTTTAATTTA TATCGGTTAT
CAGCAACCTA CCTTTGATGT GCGCCTCGAA GCTAAACATA CTGATAGTAG ATTCTCTGAC
GTGAGCAATC AAACCAAGTT AGATGACTAC ACTTTAGTTA ATTTGAGTGG CAGCGCTTAC
ATTACACCCA ATCTTCGCGC TAACTTACGT GTCGATAATC TCACTGATGA AAACTATACT
TTGTCTAATC AGTTCGGTAC AGAATATGCT ACTGACGGCA CCAACTTCTT TACCTCACTA
ACCTATAACT GGTTCTAA
|
|---|
| Protein sequence | MVLSRSSSTT YLRLCILSAF GAFAMSANAA TDVNIVSDSD LPQVELDKIV VTATRTPTKT
SNVIAQTRVI DSEELQRYQG QTVTDVLKNQ PGINIAQSGG MGTISNFYMR GYDSKQVLVL
IDGIRYSSIS AGTSSLNLLP ADQIDRIEIL YGASGSSIYG SDAMGGVIQI FTKGNIVEQS
NISTSVGYGS NNHYQVGVTG QLKNDTSSLS LGVSRNKTDG FNAIADSSSS DYNADDDGFE
STNASLGLQH KLSDSLSAGL SALYSDSTTD IDSAGTLFPN AYSDQKNGSA NAFIQHQTPL
TVTKFSYGQS IDRLTSHDNN SINYQQGSQF DTTQEQARLE SQINAQPGTV TIGAEWLSQK
LDASDVLDFS GYPNPAVQTA YNPDDRTVKS AFVGYQLSES YYDLQANYRV DDNSQYGNES
TYNIGAAVRP LDGVRIGASY ATGFRAPTFN DLYYPGYSNP DLKPETSKNT ELFVEYNKGN
QISRLTGYHT DVEDLIGGNT NTGEAKIKGL SLISDWRVNS FLFGLGYDYL DAKDKTANSA
NYNNDLVYRP QNSGLIYIGY QQPTFDVRLE AKHTDSRFSD VSNQTKLDDY TLVNLSGSAY
ITPNLRANLR VDNLTDENYT LSNQFGTEYA TDGTNFFTSL TYNWF
|
|---|
| |