| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0561 |
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| Symbol | dapE |
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| ID | 3514492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter arcticus 273-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007204 |
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| Strand | - |
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| Start bp | 655515 |
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| End bp | 656738 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637669246 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_263856 |
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| Protein GI | 71065129 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATA TTGATAACAA CCTAACTTCT CAAACCCATC AACAAGCAAC CCATCAGCAA
GAAACACTGG ATTTAAGTAT TGCCCTACTT GAACGTCCTT CTGTCACCCC AAATGATGAT
GGCTGCCAAG ACATCTTATC TGAGCGGCTG ACGCAAGCAG GCTTTGACTG CGAGTTTATG
TATTATGGTG ATAGACAAGC AAAAGGCGAA CACGCTGAGG TTAAAAACTT ATGGGCACGG
CGCGGCACAT CCAATCCAGT CATTTGCTTT GCCGGTCATA CTGACGTCGT CCCAACAGGT
GATGAAAAAA ACTGGACCTA TCCACCATTT ACCCCAACCA TTGCAGACGG ATATCTCTGG
GCGCGCGGTG CCGCTGACAT GAAAACAGGA ATTGCTGCCT TTACCATCGC CGCCGAGCGT
TTCGTAGCCA ATCATCCTCA ACACAACGGC TCAATTGCCT TTTTAATCAC CTCAGATGAA
GAAGGTCCGT CCATCAATGG TACGGTCAAA GTAATTGAAA CCTTAGAAGC ACGACAAGAA
AAAATCACTT ATTGCTTAGT TGGTGAACCA TCCAGTACCG ATACCCTAGG CGACATTATT
AAGAATGGTC GTCGTGGCTC GCTGGGCGCA GTACTCACTG TCACCGGTAA ACAAGGGCAC
GTCGCCTACC CGCACCTTGC CTCAAACCCT ATTCATGCTG CTATGTCGGC ACTCTCAGAA
TTGACCAATG CCAGTTGGGA TAATGGTAAT GATTACTTCC CTGCGACTTC ACTGCAAATA
TCTAATATCA ATGGTGGCAC GGGCGCGACT AATGTCATAC CGGAAACGCT GGAAGTCGTT
TTTAATTTCC GCTTTTCGAC TGAAACCACC GAAGATGAGC TAAAAGCGAA AACACATGCC
ATCTTTGATA AATACTTTAA AGACAGTAAA GCCAAATATG ATATTCATTG GAAACTATCT
GGGCAGCCAT TCTTAACGCC TGAAGGTAAA TTGGTCTCGG CATGCCAGCA AGCGATTAAA
TCTGTAACCG GTACTGATAC GACATTGTCA ACTTCTGGCG GTACATCAGA TGGACGCTTT
ATCGCCCCAA CCGGTGCACA AGTCGTTGAG CTTGGCGTAC GTAATGCCAC AATTCATCAG
GTTGATGAAA AAGTTGAGGT TGATGACTTG GGCAGATTGG CGCAGATTTA TGAAAGGATT
TTAGAGAATT TACTATTGGA TTAG
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| Protein sequence | MSDIDNNLTS QTHQQATHQQ ETLDLSIALL ERPSVTPNDD GCQDILSERL TQAGFDCEFM
YYGDRQAKGE HAEVKNLWAR RGTSNPVICF AGHTDVVPTG DEKNWTYPPF TPTIADGYLW
ARGAADMKTG IAAFTIAAER FVANHPQHNG SIAFLITSDE EGPSINGTVK VIETLEARQE
KITYCLVGEP SSTDTLGDII KNGRRGSLGA VLTVTGKQGH VAYPHLASNP IHAAMSALSE
LTNASWDNGN DYFPATSLQI SNINGGTGAT NVIPETLEVV FNFRFSTETT EDELKAKTHA
IFDKYFKDSK AKYDIHWKLS GQPFLTPEGK LVSACQQAIK SVTGTDTTLS TSGGTSDGRF
IAPTGAQVVE LGVRNATIHQ VDEKVEVDDL GRLAQIYERI LENLLLD
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