| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0489 |
|---|
| Symbol | rplC |
|---|
| ID | 3514288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 595972 |
|---|
| End bp | 596610 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637669176 |
|---|
| Product | 50S ribosomal protein L3 |
|---|
| Protein accession | YP_263786 |
|---|
| Protein GI | 71065059 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0087] Ribosomal protein L3 |
|---|
| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000000109318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.010086 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCG GTTTAGTCGG TAAAAAATGC GGCATGACCC GTGTCTTCAC TGAAGCAGGC
GCATCTATCC CTGTAACAGT AGTTGAGATC AGTGCGAACC GTATTACTCA AGTAAAAAAT
ACTGATGTAG ATGGCTATCA AGCCATTCAA GTTACCACAG GTACCCGTCG TGACAGCCGC
GTAACAGCCG CACAAAAAGG TCACTTCGCT AAAGCTGGCG TTGCCGCTGG TCGTGGTGTT
TGGGAATTTC GTGCCAATGA CAGCGATCTT GAAGGTCGTG AGATTGGTGG TGAGATCCTA
GCTGACTTGT TCGAACAAGG TCAGATGGTT GATGTCACAG GAAGCAGTAA AGGTAAAGGT
TTTCAAGGTC CTGTAAAACG TCATAACTTT AGCATGCAAG ATGCTACTCA TGGTAACTCA
GTATCTCATC GTGCACATGG TTCAACTGGT CAAAACCAGT CACCAGGTAA AGTATTCAAA
GGCAAAAAGA TGGCGGGTCA GATGGGTAAC AAGCGTGTTA CTGTTCAAGG CCTAGAAGTG
ATTTCGGTTG ATGCCGAAAA AGGGTTACTT GTCATCAAGG GTGCTATCCC AGGTGCCACC
GGTGGCGATG TCATCGTACG TCCGTCAGTC AAAGCCTAA
|
|---|
| Protein sequence | MAIGLVGKKC GMTRVFTEAG ASIPVTVVEI SANRITQVKN TDVDGYQAIQ VTTGTRRDSR
VTAAQKGHFA KAGVAAGRGV WEFRANDSDL EGREIGGEIL ADLFEQGQMV DVTGSSKGKG
FQGPVKRHNF SMQDATHGNS VSHRAHGSTG QNQSPGKVFK GKKMAGQMGN KRVTVQGLEV
ISVDAEKGLL VIKGAIPGAT GGDVIVRPSV KA
|
|---|
| |