Gene Psyc_0339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_0339 
Symbol 
ID3515056 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp419133 
End bp420980 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content43% 
IMG OID637669026 
Productputative regulatory protein TypA or elongation factor Tu 
Protein accessionYP_263642 
Protein GI71064915 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.597633 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAACG ATATCAAACA CCTGCGTAAC ATTGCAATTA TTGCCCACGT TGACCACGGT 
AAAACTACTT TGGTTGATAA GCTATTACAT CAGTCTGGTA CTTTTGGTGA CCGTGCCAAC
ATTGCTGAGC GTGCAATGGA TTCAGGTGAT ATTGAGCAAG AACGTGGTAT TACTATTCTG
GCTAAAAATA CAGCCATTCG TTGGACAGAT AACACTGACG GTACAGAATA CCGTATCAAC
ATTGTTGATA CCCCAGGTCA CGCCGACTTT GGTGGTGAAG TTGAACGTGT AATGTCTATG
GTTGACTGCG TACTTCTAGT CGTTGATGCG GTTGATGGTC CAATGCCTCA GACCCGTTTT
GTGACTCAAA AAGCGTTCGA GCAAGGTCTA AAACCTATCG TTGTCATCAA TAAAATTGAC
CGTCCTGGCT CACGTCCTGA TTGGGTAATG GATCAAATCT TTGATTTGTT TGATAACCTT
GGTGCGACTG ATGAGCAGTT AGATTTCCCA GTGGTATATG CCTCAGCATT GAATGGTATT
GCTGGTCTAG AAGCTGATAA CTTAGCTGAT GACATGACGC CACTTTTCAA AACTATTGTT
GATGTGGTTC AGCCTCCTCA AGTGGATGCT GAAGCACCTT TCCGTATGCA AATCTCAAGC
CTTGATTACA ACAGCTTCGT TGGTGTTATC GGTATTGGTC GTATTCAGCG CGGTAAAGTA
AAAACCAATA CACAAGTGAC TGTCATTGAT AAAAATGGCA ATACTCGTAA TGGCCGTATT
TTGAAAATTA TGGGTTATCA TGGTCTTGAT CGTATTGATG TAGAAGATGC GCAAGCAGGC
GATATCGTTT GTATTACTGG TATTGATGCA CTAAATATCT CTGATACGAT TTGTGATCCT
AGCACTGTCG AAGCATTAAA GCCTTTGACG GTTGATGAAC CTACTGTTTC AATGAACTTC
CAAGTAAATA ACTCACCTTT TGCTGGTCGT GACGGCAAAT TTGTGACCTC GCGTAACATT
CGTGAACGTC TTGAGCGTGA ATTGATTCAT AACGTCGCAT TACGTGTAGA AGATACAGAG
TCTCCTGATA AATTCAAAGT ATCAGGTCGC GGTGAGCTTC ATCTATCTGT ACTTATCGAA
AACATGCGCC GTGAAGGTTT TGAGATGGGT GTTTCAGGCC CAGAAGTTAT TGTTAAAGAA
GTTGATGGTA AGCTACAAGA GCCGTATGAA AACGTGGTCT TCGATATTGA AGATGAGCAT
CAAGGTTCTA TCATGGAGCA GATTGGCTTG CGTAAAGGCG AGATGACCAA TATGGAACTT
GATGGTAAAG GTCGTATGCG TATTGAAGCG ACTATGCCTG CCCGTGGTTT GATTGGTTTC
CGCTCTGAGT TCTTAACCTT GACTTCAGGT TCAGGGATCA TGACGTCAAG CTTCTCACAT
TACGGTCCAC AAAAGATTGG TGATGTTGGT GGTCGCTCGA ATGGTGTGTT GGTTTCTATG
GCGAAGGGTG TTTGCCTAGG TTTTGCTCTA TTTAACCTAC AAAAACGCGG TAAATTATTC
GCTGAGCCAC AGCTTGAAGT TTACGAAGGT ATGATCGTTG GTCTTAACTC ACGTAACGAT
GACATGGCCG TTAACCCGAC GACTGCTAAG CAGTTAACCA ACGTCCGTGC TAGTGGTACT
GATGAAGCGC TAACACTAAC GCCAGCAGTC AAGTTTACGC TTGAGCAAGC ACTAGAATTC
ATCCAAGATG ATGAATTGGT AGAAGTAACG CCAAAAGCGA TTCGTCTACG TAAGCGCTAT
TTGACTGAAA GTGAACGTAA GCGTTATGGT CGTAAGAAAG GTGCTTAA
 
Protein sequence
MANDIKHLRN IAIIAHVDHG KTTLVDKLLH QSGTFGDRAN IAERAMDSGD IEQERGITIL 
AKNTAIRWTD NTDGTEYRIN IVDTPGHADF GGEVERVMSM VDCVLLVVDA VDGPMPQTRF
VTQKAFEQGL KPIVVINKID RPGSRPDWVM DQIFDLFDNL GATDEQLDFP VVYASALNGI
AGLEADNLAD DMTPLFKTIV DVVQPPQVDA EAPFRMQISS LDYNSFVGVI GIGRIQRGKV
KTNTQVTVID KNGNTRNGRI LKIMGYHGLD RIDVEDAQAG DIVCITGIDA LNISDTICDP
STVEALKPLT VDEPTVSMNF QVNNSPFAGR DGKFVTSRNI RERLERELIH NVALRVEDTE
SPDKFKVSGR GELHLSVLIE NMRREGFEMG VSGPEVIVKE VDGKLQEPYE NVVFDIEDEH
QGSIMEQIGL RKGEMTNMEL DGKGRMRIEA TMPARGLIGF RSEFLTLTSG SGIMTSSFSH
YGPQKIGDVG GRSNGVLVSM AKGVCLGFAL FNLQKRGKLF AEPQLEVYEG MIVGLNSRND
DMAVNPTTAK QLTNVRASGT DEALTLTPAV KFTLEQALEF IQDDELVEVT PKAIRLRKRY
LTESERKRYG RKKGA