| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0068 |
|---|
| Symbol | nusA |
|---|
| ID | 3514156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 76010 |
|---|
| End bp | 77494 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637668752 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_263376 |
|---|
| Protein GI | 71064649 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.272639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGTG AAATCTTAAC GGTAGTAGAA ACTGTCAGTA ACGAGAAGGG CTTAAATCCT
GAAGATATCT TTGAAGCAAT TGAAGATGCC TTGGTAGTCT CGACTAAGAA AAAAGTATAT
ACCGATCAGC CAGAAGTAGA AGTGCGGGTC TCAATCGACC GTGCAACGGG CGATTATGAT
ACTTATCGTT ATTGGACAGT GGTTGCAGAT GAAGACCATG AAATGCCTGC TTGTCAGCTT
GCGATTACTG ACCTTGATCA AGACGAATGG TCAATTGGTG ATGTCAAAGA AGAGCAAATT
GAGTCGATTG AATTCGGTCG TATTGCTGCC ACTCAAGCCA AACAAGTTAT CATCCAAAAG
ATTCGTGAAG CTGAGCGTAA TTTAGTAGCA GATGCTTTTG AGCCACGTGT TGGCGAGATG
ATGTACGGCG AAGTCAAAAA ACAAACCCGT GATGGTTACA TTATTGATTT AGGTGACAAC
GCTGAAGGTT ATTTGTCACG TGATCAGATG TTGCCACGTG AGCAGCTGCG TGCAAAATCG
CGTATCAATG CTATTTTGTA TCATGTGAAC CGTGAAAACC GCGGCGCACA GTTATTATTG
TCACGTACGC ATCCTGAAAT GCTCTCGGCA TTGATGCAAA AAGAAGTGCC TGAGATTGCA
GAACAAATCA TCGAAATTCG TAATGTCGCT CGCTTGCCGG GTACTCGTGC TAAAATAGCG
GTTAAGACCA ACGATCATCG TATCGATCCG GTTGGTGCTT GTATCGGTAT GCGTGGTACA
CGTATCCAAG CGGTACAGCA AGAGCTTGAT GGCGAGCGTA TTGATGTGGT GGTTTGGTCA
GATGATCCTG CCCAATTTAT CATCAGCTCT TTGGAGCCCG CAGACGTAAG CAGTATCATC
TTAGATGAAG ATACGCAGTC GGCTGATATT ATCTTTAGCA CCAACGATCA ATTGGCGCGT
GCAATTGGCT CACAAGGTCA AAACGTACGC TTAGCCTCTG AGCTGACCGG CTATAAGCTG
AATATGATGC TAGAAGAAGA GTATCAGCAG CGTCAAGCAA ACGAATCTAA AGCTTTTATT
GAACTATTCT ATGAACGTCT AGAAGTGGAT AAAGACTTAG CACAAGCGCT TGTCGATATT
GGTTTTACCA GTATTGAAGA AGTGGCTTAT GTACCAGTCG AAACCTTCTA CGATATCGAG
GGATTAGATG ATGACGCGAT TGATATGATC CAAGAGCGTG CAAAAGAAGT GGTCATCGCA
GACGAATTGG TCAAACAACA GAACATGAAA GAGCCAAGTC AAGAACTACA AGATCTTGAA
GGAATGACGG TCAGTTGGGC TTATAAAATG GCTCAAAAAG ACATCATTAC CGTTGATGAC
TTGGCAGAAC AAGCCGTCTT TGATTTAGAA GATATCGAAG ATTTAGATAC CGAAACCGCA
GGAAAACTCA TCATGAAAGC TCGGGAATCT TGGTTCAATG AATAA
|
|---|
| Protein sequence | MSREILTVVE TVSNEKGLNP EDIFEAIEDA LVVSTKKKVY TDQPEVEVRV SIDRATGDYD
TYRYWTVVAD EDHEMPACQL AITDLDQDEW SIGDVKEEQI ESIEFGRIAA TQAKQVIIQK
IREAERNLVA DAFEPRVGEM MYGEVKKQTR DGYIIDLGDN AEGYLSRDQM LPREQLRAKS
RINAILYHVN RENRGAQLLL SRTHPEMLSA LMQKEVPEIA EQIIEIRNVA RLPGTRAKIA
VKTNDHRIDP VGACIGMRGT RIQAVQQELD GERIDVVVWS DDPAQFIISS LEPADVSSII
LDEDTQSADI IFSTNDQLAR AIGSQGQNVR LASELTGYKL NMMLEEEYQQ RQANESKAFI
ELFYERLEVD KDLAQALVDI GFTSIEEVAY VPVETFYDIE GLDDDAIDMI QERAKEVVIA
DELVKQQNMK EPSQELQDLE GMTVSWAYKM AQKDIITVDD LAEQAVFDLE DIEDLDTETA
GKLIMKARES WFNE
|
|---|
| |