Gene Psyc_0063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_0063 
SymbolpilC 
ID3514149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp69402 
End bp70625 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content44% 
IMG OID637668745 
Productpilin secretion/fimbrial assembly system protein, PilC 
Protein accessionYP_263371 
Protein GI71064644 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.57868e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAAG CTAAGACCGA CATGCTGTTA GACTTTGTCT ATGATGGGGT CAACCGGCGC 
GGGCAAAAGG TAAAAGGTGA GACCACCAGT CATAGCTTAG AGCTTGCCAA AGCCACATTG
CGCAAACAAG GTATCACGGT TAAAAGTATC AAGAAAAAGC CAAAACCCTT ATATAGCTTT
AAAAAACCCA TCAAGCCTAT CGATATTGCT ATTTTTGCGC GTCAATTGGC AACGATGATG
AAAGCTGGGG TGCCATTGAC CCAATCCTTT GAAATTGTTG CTGACTCTCT CGATAACCCA
AGTATGAAAG ATTTGGTTTT ACAAATCAAA GCCGATATTG AAGCTGGTGG CAACTTTGCT
TCAGCATTAC GCAGGCATCC ACGATATTTT GATGACCTTT TTTGCTCGCT TGTCGATTCT
GGTGAGCAGT CAGGTGCGTT AGAAACCATG TTAGAGCGGG TTGCGACGTA TAAAGAAAAA
AGCGAGCTGC TCAAAGCTAA AATCAAAAAA GCCATGAAAT ATCCTATCGC GGTCGTTGTA
GTCGCTATCA TTGTGACCAT CATTCTGCTC GTTAAAGTCG TTCCAGTATT TGCTGATTTA
TTTGGCTCTT TTGGCGCAGA GCTACCTGCT TTTACGCAGA TGGTAGTAAG TATGTCTGAG
TGGATGCAAG CGTGGTGGTT CATGTTAATT GTGTTTATCG GTGGCGCTAT TATCGGATTT
TCAGAAGCTA AGAAGCGCTC AAAGAAATTT CGCGATTTCT TAGACCGTGT GGCATTAAAA
GCCCCGATAT TTGGTAATAT CGCTTACCAA GCTGTTATTG CGCGTTTTGC TCGCACTTTG
TCTACCACTT TTGCTGCTGG CGTACCACTT ATTGATGCTC TGGACTCTAC TGCGGGCGCG
GCAAATAACG TGGTGTTTTA TAACGCGATT CAGCAAATCA AAAATGACGT CTCTACAGGG
CAACAATTAC AGTTCTCCAT ACGCTCAACC AATTTATTTC CAAGCCTTGT CATTCAAATG
GTTGGTATCG GTGAAGAGTC TGGTAGCTTG GAAGACATGC TCGATAAAGT AGCGATCTAC
TATGAAAACG AAGTCGATAA CGCGGTTGAT GGTTTGACCA GCTTGATGGA GCCGCTTATT
ATGGCGGTAC TTGGCGTATT AGTCGGTGGC TTGGTCATTG CCATGTACCT ACCAATTTTT
CAAATGGGCT CAGTGGTAGG CTAA
 
Protein sequence
MAKAKTDMLL DFVYDGVNRR GQKVKGETTS HSLELAKATL RKQGITVKSI KKKPKPLYSF 
KKPIKPIDIA IFARQLATMM KAGVPLTQSF EIVADSLDNP SMKDLVLQIK ADIEAGGNFA
SALRRHPRYF DDLFCSLVDS GEQSGALETM LERVATYKEK SELLKAKIKK AMKYPIAVVV
VAIIVTIILL VKVVPVFADL FGSFGAELPA FTQMVVSMSE WMQAWWFMLI VFIGGAIIGF
SEAKKRSKKF RDFLDRVALK APIFGNIAYQ AVIARFARTL STTFAAGVPL IDALDSTAGA
ANNVVFYNAI QQIKNDVSTG QQLQFSIRST NLFPSLVIQM VGIGEESGSL EDMLDKVAIY
YENEVDNAVD GLTSLMEPLI MAVLGVLVGG LVIAMYLPIF QMGSVVG