Gene Psyc_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyc_0003 
SymbolrecF 
ID3514720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter arcticus 273-4 
KingdomBacteria 
Replicon accessionNC_007204 
Strand
Start bp3463 
End bp4677 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content43% 
IMG OID637668685 
ProductDNA replication and repair protein RecF 
Protein accessionYP_263311 
Protein GI71064584 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.00736355 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.72391e-06 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGATTGAAC GTCTACAAAT CTCATATTTG CGTAATTTAA CGCCCATCAA TTTAGCACCT 
GCTGCTTGCA ACGTCATTAT CGGCGCTAAT GGCAGCGGTA AAACCTCGCT ACTTGAAGGT
ATGTTTTTGC TATCAAGAGG TAAGAGTTTC CGCCACAATC AGCCCAAACG CTATATTCAG
CATCATAAAG ACGCCGCAAC TGTACATGCT AAACTTAGTG ATGGCCGTAC TTTGGCTATC
CAAAAGCAAG CAGACGCTAC GACAATTTTA CGTCTCAATC AAACCACGGT ATACAATCAA
AGTATTTTAA CGGAGCAGCT TCCTACCTTG CTTATAGATC CATCGACGAT GGACATGCTA
GAGCAGGGCA GTGCCAGTCG TCGGCAGTTA TTAGATTGGT TGGTGTTTCA CATGAAACAA
GGTTTTCATC CACAGTGGAT TGCGTATCAG CGCTTATTAA AACAGCGCAA TAGTTTACTC
AAACAACGAC GTCATTTGAC TCACGTTCAG CTTGCTGAGC TTAGAGCTTG GGACAAAGGA
CTTGCCAGTC ATGCAGCGCT GATTCATCAC TACCGTGAAG CTATATTTGA AGCTTGGCAA
CCTTATTTTT CTGAGAGCAT TGCACAGTTA TTGCCTGCTT ATGCTGAGCA ATTAAGCTTG
AGCTACAATG CGGGCTACGA TACGAGTGTA GCGCTCGATA TACAGCTTAA TGAGCGCTTA
GATCAGGATT TACAGTTGGG TTATACGCGT ATTGGTAATC ACCGCGCTGA CATCCATGTG
CATTGGCGCT CTATAAGACC AATACATAAG GCTAATGAGC ACCTAAACTC ACCTTTAGCA
GCAGCAGCGG ATTCGACTTT TAAGTTACCT ATTTTGAAAG AGCAAGCGGC CAACATTTTG
TCTCGTGGAG AGAAAAAATT GTTGATTACG GCATTGCGCT TATCACAATT ACCACTTTTG
CTTAACACTG GGAATGATCT AGAGGCATCT GTTAATGACG CTAAATTAAG CGCTACACCA
GTGGTATTAC TAGATGATAT CACCGCAGAG CTGGATGATA GGGCGATAGA GATTTTATTA
TCAACCTTAG CACAGTTGCC ATGCCAGGTA TTTATGACCA GTTTGACCGA TAGTATTTTA
CCTTTAGTGT ATGAGTATTG GGAAAAACCC CAAGTGTTTC ACATGAAACA AGGTAGTATT
TTACCAGCTC AGTAG
 
Protein sequence
MIERLQISYL RNLTPINLAP AACNVIIGAN GSGKTSLLEG MFLLSRGKSF RHNQPKRYIQ 
HHKDAATVHA KLSDGRTLAI QKQADATTIL RLNQTTVYNQ SILTEQLPTL LIDPSTMDML
EQGSASRRQL LDWLVFHMKQ GFHPQWIAYQ RLLKQRNSLL KQRRHLTHVQ LAELRAWDKG
LASHAALIHH YREAIFEAWQ PYFSESIAQL LPAYAEQLSL SYNAGYDTSV ALDIQLNERL
DQDLQLGYTR IGNHRADIHV HWRSIRPIHK ANEHLNSPLA AAADSTFKLP ILKEQAANIL
SRGEKKLLIT ALRLSQLPLL LNTGNDLEAS VNDAKLSATP VVLLDDITAE LDDRAIEILL
STLAQLPCQV FMTSLTDSIL PLVYEYWEKP QVFHMKQGSI LPAQ