| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4986 |
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| Symbol | |
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| ID | 3370538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5911246 |
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| End bp | 5915475 |
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| Gene Length | 4230 bp |
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| Protein Length | 1409 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637655355 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_238051 |
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| Protein GI | 66048210 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGAGG CCGCGCGCTT TGGTGACGAA ATATCGCATA CCGGCGCCCT GGGGGGCTTC
CTGATCGGGG CTGTGCTCGG TATTGCGCTC ATTGCGACGG TGGCGATCGC AACCTTCACG
TGCGGGTTCG GCGTGGCTCT TCTGGCAGGA CTTGCAGCAG GCGTCGGAGG TAGCCTGCTC
ACCGCCGCAG GAGAGGCGAT AGGGAGTATG TTTTCCTCCC CTTCCGGCAC GATCATCACG
GCCTCACCCA ATGTGTACAT CAACAACCGC AAGGCAGCGC ATGTTGAAAA AAGCATTGGT
GCCTGCGACA AACATCCAGG GCCGGTCAAG ATTGCCGAGG GTTCGACCAA CGTCTTCATC
AACAGTGTGG CGGCGGCGCG CAAAGGCGAC AAGCTGACCT GTGGCGCGAC CATCTCCGGC
GGCTCCGACA ACGTATTCAT CGGCGGCGGC AGGTATCGCT ATCTGCCAGT GGACGACGAA
ATTCCAGGCT GGCTGCGCAC TACCGTCGAT GTGCTGATGG CCGTGGCGGG TGCGGCAGGT
GGTATCGCCC AGTTGATCAA GGCCGGAACG CAGGCAGGCA TGAAAGCAGT GCTGCCCTGC
GCCCTGAAGT TCACCGCAGG TTTCGTGGCC GGCGAAGTGG GCAGTCGCTA CGTGGTTGAG
CCTGTAATGC GCAGTGCGAT CGGCGGCCTG AGCGGCAATC CGGTCGACAC CACGACTGGC
CGCAAGCTGA TCCCGGATGA GATCGACTTC AGCCTGCCAG GCCTGATGCC CATCGAATGG
TCGCGTTTTT ACGCCAGCAA TCTGAATGTC GACAGCGTAC TCGGCAAAGG CTGGGTGCTG
CCGTGGGAGC AAAGCCTGCG CAAGCGCGGC AGCTTCCTCT ACCTTACGGA CAACCAGGGC
CGCACCGTAC CGTTCGTGGA CATAGCGCCC GGCCAGCGCA TCTACAACCC TCACGAACAG
GTCTATCTGG TCTGCACGCA GGGTGGGCAC TACCTGCTGC AGACGCTGGA CAACATCTTC
TTCTACTTCG GCGAAGTGCC TGACGACAAC AAGCCGGTCC CGCTGGATCG TATCGAAAAC
GCACTCGGTC ACTTCCTGCA TTTCACCCGC ACTGAACAAG GCACGCTGAC CGACATCAGC
GCGACGGGCG GGATCCGCGT GCACCTGCAT TACGACGAAG TGACCACGCG CCTGACCTCG
GTCAAGCGCA TCGTCGACAA CGAGGCGGTC GAAACGCTGG TTCAATACCA CTACGACAGT
AATGGCCAGC TCGCTGAGGT GTTCAACCGC AACGGTGATT CAGTACGCCG TTTCAGTTAC
ACCGATGGCG TCATGACCCG CCACAGCAAC GCACTGGGCC TGACCTGCGA GTACCGCTGG
GAAATCATCG ACGGCCAGCC GCGTGTCGTC GAACACCAGA CCAGCGATGG TGAGCATTTC
CACTTCCGCT ACGACCGCGA GGCCCGCACC ACCTGGGTCA CCGACGTACT GGGCCGCGAG
CTGGAAATTC ATTACAACAA GGATCATCGC GTCACCTCGA GCCGCGACTA CAGTGGCGAT
CACTACGTCA TCGAGATCGA CGACACCGGC AACATGACCG GGCTGACCCT GCCCGATGGC
AACCAGCTGG CATTCGAGTA CGACGAGTTC GCCCGATTGC TCAAGGAGAC CGATCCGCTG
GGCCGCAGTA TTCGCTACCA GTACCACCAC CTGACGACGC TGATCACTCA GGTCGACTAC
CCGGATGGCA GCACCTGGAA GGCCAACTAC GATGCCAAAG GCAATCTCGT GGCCGAGATC
GATGCGCTGG GTCACAAGAC CGAGTACCTC AACGGTGAGG ACGGCCTGCC GCACACCATC
GTCGACCCGA CGCTCAAGTC CAAATACCTG TGGTGGAACA ACCTGGCGCA AGTGCAGCGC
TTTCAGGATT GTTCGGGCAA AAGCACTTAT TACCGCTATG ACGAGCGCCA CCACCTAGTG
GCCGTCACCG ATGCCCTGAA CAACACCACC ACGCTGGAAC GCAAGCCCGA CGGCGAAGTG
CTGCGCATCA ACCACCCGGA CGGCACACAC GAGACCTTTA CCTACAACGA ACTGGGCCAG
GTCCTGACCC ACACCGATGG CAAAGGCCAG ACCACCCAGC TGCTGCGCAA CGGCCGTGGC
CTGCCTAAAT GGCGACAGGA TGCCAAAGGG CAGACCATCA CCTACGAATA CGACAAAGCC
ATTCGCCTCG TCGCCCTGAC CAACGAAAAC GATGCGACCT ACCGCTTTGC CTACGACAAC
GCGGACCGTC TGATCGAAGA AAAACGCATC GACAACCTCA CTCGCCGTTT CAGCTACAAC
CTCGGCGGGC ACCTGACACA GGTCGAGGAA ATCGGCTACG GTGATAAAGG CGAACAACCA
CGGCGCAGCA CCCATCTGGA GCGCGACCCG ATTGGTCGCC TGCTGGCCAA GCTAAACGAC
GATGCGCGTC AGGACTACGC CTACGACGAC GGCGACCGGC TGCTGTCAAT CGAGCGCAAG
CCGACGGACA CCGGCAGAAA ACTGGGCATC ACCGCTGAAA AGATCGACTT CGCCTACGAC
CTGCTCGGCC GCCTCGTCAA AGAAACCACG CCTCAGGGCG CGCTGGCCTA CGAGTACGAT
CCGCTCAGCA ACCTGACCAC CCTGACCCTG CCCACCGGTC AACACCTGAA CCACCTGTAT
TACGGCAGCG GTCACCTGCA CCAGATGAAT CTGGATGGCC AGCTGATCAG CGACATGGAG
CGCGACGATC TCCATCGCGA GATCTATCGC ACCCAAGGCA AGCTCACCAG TTGCTTCGGT
TACGACAGCA TGGGTCGCAA GGCCTGGCAG TACGCCACAA CCTTGCCTGC GGAAAAGCTG
TCACAGATCC AGAACCCGCT CATAAAGCCA GAGCGCTACG TCGAACACGC CTACAACCCG
ATTCACCGCC GCTACGAATA CGACCCGGCT GGCGAATTGA GCCGCACCCT CGACAAGCTG
CGCGGCGAAA CCCAGTACGA ATACGAAGCC AACGGCCAGT TGCTGGCGCG CAACACCGGT
CGCGTGGTCG ATGGCGAAGA GTTCCGCTAC GACGCTGCGG CCAACCGCCT CAACTTCAAC
ACCAGCCGCT TCGACCACGT CAAAGACAAC CGCCTCAGAC AATGGGCGAA CCACGAATAC
AAATACGACG CCTGGGGCAA CCTGATCGAA AAAGTCGTCG GCATCGTGCG CTGGCAGACC
TTCACCTACG ACTGCGAAAA CCGTCTGGTC AAAACCGAGA CCATGGCTGA CACGCAGGTG
GAAAGCACCA GCAGCTACCA GTACGACAGT TTGGGCCGAA GAGTTGCCAA ACAGTCCGAG
ATCAAAGGCC ACACCGAACA CAAACGCTTC CTCTGGCAAG GCTTGCGCAT GCTGCGTGAG
GAAAATCCAG GACAGAGCAG CCTGTATATC TACGAGCCCG GCAGCTATGC GCCGCTGGCG
CGCGTGGATG AAAAAGAAGG CGAGGTAGAG AACAAGGTTT ATTACTTCCA CACCGACCAG
ATCGGCACAC CGCTGGAAAT GACCGACGCC GAAGGGCAGA TCGTCTGGCA GGCCAAGTAC
CGGGCGTGGG GGGCGGTTGA AAAGCTGGTG GTGAACGAGG TCGAGCAGAA CCTGCGGTTT
CAGGGGCAGT ATTTTGATGT CGAGACGGGG CTGCATTACA ACACGTTTAG GTATTATGAC
CCGGAGATTG GGCGGTTTAT AACGCAGGAT CCGATTGGGT TGTTGGGTGG GTATAACCTT
TACCAATATG CTCCAAGTGC AATCGGCTGG ATTGATCCGC AAGGTTTAGC TACGCTTTTT
GAATTAGGTA CCTATGGAGG ACTTAACGGG TCAACTCACG TTGGAGATGG TTTACAAGCT
CACGAACTCC TCCGTCACGA ATATCTAGTC CAGCAGAATC TTGCGGAGAA GAGTACCAGG
CTTCCAGGAA ATCCATCTAT TGCGCTGGAT CTAGATCATC ACACTAGAGG CCCAATGAAA
GATACAAGAG GTATTGGTGG TACTCATTGG CATGAGGCGC AAATACGTGA GAGCCAAGGT
TTGGGTAGGA ATGAATTTGC ATCATCTGTA AAGCGTGAGC TAGACATCAC TTCAGGCGCG
CTACGGAAGA GTGGGGTTCC TAAGTCTAGA GTGAAAGAGT TAAGAAGAAT GGCCAAGAAG
TTTCATAGCA GTCTCAATGG GTGTGGGTAA
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| Protein sequence | MFEAARFGDE ISHTGALGGF LIGAVLGIAL IATVAIATFT CGFGVALLAG LAAGVGGSLL
TAAGEAIGSM FSSPSGTIIT ASPNVYINNR KAAHVEKSIG ACDKHPGPVK IAEGSTNVFI
NSVAAARKGD KLTCGATISG GSDNVFIGGG RYRYLPVDDE IPGWLRTTVD VLMAVAGAAG
GIAQLIKAGT QAGMKAVLPC ALKFTAGFVA GEVGSRYVVE PVMRSAIGGL SGNPVDTTTG
RKLIPDEIDF SLPGLMPIEW SRFYASNLNV DSVLGKGWVL PWEQSLRKRG SFLYLTDNQG
RTVPFVDIAP GQRIYNPHEQ VYLVCTQGGH YLLQTLDNIF FYFGEVPDDN KPVPLDRIEN
ALGHFLHFTR TEQGTLTDIS ATGGIRVHLH YDEVTTRLTS VKRIVDNEAV ETLVQYHYDS
NGQLAEVFNR NGDSVRRFSY TDGVMTRHSN ALGLTCEYRW EIIDGQPRVV EHQTSDGEHF
HFRYDREART TWVTDVLGRE LEIHYNKDHR VTSSRDYSGD HYVIEIDDTG NMTGLTLPDG
NQLAFEYDEF ARLLKETDPL GRSIRYQYHH LTTLITQVDY PDGSTWKANY DAKGNLVAEI
DALGHKTEYL NGEDGLPHTI VDPTLKSKYL WWNNLAQVQR FQDCSGKSTY YRYDERHHLV
AVTDALNNTT TLERKPDGEV LRINHPDGTH ETFTYNELGQ VLTHTDGKGQ TTQLLRNGRG
LPKWRQDAKG QTITYEYDKA IRLVALTNEN DATYRFAYDN ADRLIEEKRI DNLTRRFSYN
LGGHLTQVEE IGYGDKGEQP RRSTHLERDP IGRLLAKLND DARQDYAYDD GDRLLSIERK
PTDTGRKLGI TAEKIDFAYD LLGRLVKETT PQGALAYEYD PLSNLTTLTL PTGQHLNHLY
YGSGHLHQMN LDGQLISDME RDDLHREIYR TQGKLTSCFG YDSMGRKAWQ YATTLPAEKL
SQIQNPLIKP ERYVEHAYNP IHRRYEYDPA GELSRTLDKL RGETQYEYEA NGQLLARNTG
RVVDGEEFRY DAAANRLNFN TSRFDHVKDN RLRQWANHEY KYDAWGNLIE KVVGIVRWQT
FTYDCENRLV KTETMADTQV ESTSSYQYDS LGRRVAKQSE IKGHTEHKRF LWQGLRMLRE
ENPGQSSLYI YEPGSYAPLA RVDEKEGEVE NKVYYFHTDQ IGTPLEMTDA EGQIVWQAKY
RAWGAVEKLV VNEVEQNLRF QGQYFDVETG LHYNTFRYYD PEIGRFITQD PIGLLGGYNL
YQYAPSAIGW IDPQGLATLF ELGTYGGLNG STHVGDGLQA HELLRHEYLV QQNLAEKSTR
LPGNPSIALD LDHHTRGPMK DTRGIGGTHW HEAQIRESQG LGRNEFASSV KRELDITSGA
LRKSGVPKSR VKELRRMAKK FHSSLNGCG
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