Gene Psyr_4936 details

Gene Information

• Locus tag: Psyr_4936
• ID: 3370488
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. syringae B728a
• Kingdom: Bacteria
• Replicon accession: NC_007005
• Strand: +
• Start bp: 5851435
• End bp: 5851980
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637655305
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_238001
• Protein GI: 66048160
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAACGTAG TCGCAACAAA ATTGCCGGAA GTCCTGATTC TCGAACCCAA GGTATTCGGT 
GATGAACGAG GTTTTTTCTA TGAAAGTTTC AACGCCAAGG CTTTTCAGGC TGCCACTGGC 
CTGACCCGTG AATTCGTACA GGACAACCAC TCGCGTTCGC AGCAAGGCGT CTTGCGCGGG 
CTGCACTATC AGATCGAAAA TGCCCAGGGC AAACTGGTGC GCGTCACGGT CGGCAAGGTG 
CTGGATGTGG CCGTGGACAT TCGCCGCAGC TCGCCGAACT TCGGCCAGTG GGTCGGCGTC 
GAGCTGTCCG CTGAAAACGC CCGTCAGCTG TGGGTTCCGG AAGGCTTTGC CCATGGCTTC 
GTGGTGCTCA GCGAACACGC CGAGTTCCTG TACAAGACCA CCGACTACTA CACGCCTTCG 
GCCGAACGCT GCATCGCCTG GGACGATGCG GATCTGGCCA TCGACTGGCA ATTCGACGGC 
CAACCCAACC TGTCGGCCAA GGATCAGCAA GGCAAGCGCC TGAAAGAAGC CGACCTGTTT 
CCCTGA 

 

Protein sequence

MNVVATKLPE VLILEPKVFG DERGFFYESF NAKAFQAATG LTREFVQDNH SRSQQGVLRG 
LHYQIENAQG KLVRVTVGKV LDVAVDIRRS SPNFGQWVGV ELSAENARQL WVPEGFAHGF 
VVLSEHAEFL YKTTDYYTPS AERCIAWDDA DLAIDWQFDG QPNLSAKDQQ GKRLKEADLF 
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