| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4827 |
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| Symbol | |
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| ID | 3370377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 5727414 |
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| End bp | 5729408 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637655194 |
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| Product | BCCT transporter |
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| Protein accession | YP_237892 |
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| Protein GI | 66048051 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.767861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCTG CGAGTTCCTC TTCAAGCGGC ATGGTTCGCA TGAATGCTCC AGTGTTCTAT
TTCGCTGCGA GTTTTATTCT GATTTTCGGC ATCGTCGTGA TCGCGTTCCC GCAAGCCAGC
GGCGAATGGC TGCTGGCGGC GCAAAACTGG GCGGCCAACA CGGTCGGCTG GTACTACATG
ATGGTCATGA CCCTGTACCT GGTCTTCGTG GTGGTCACCG CCTTGTCGGG CTTCGGCAAG
ATCAAGCTCG GTGCCGACCA CGACGAACCC GAGTTCAGTT ACCTGTCATG GGCCGGGATG
CTGTTTGCCG CCGGCATCAG CATCACGCTG TTCTTTTTCT GCGTTTCAGA GCCCCTGACG
CACCTGCTGC AGCCGCCGCA GGGCGAGGGT GGCACCGCAG AAGCTGCGCG CCAGGGCATG
CAGTTGCTGT TTCTGCACTG GGGCCTGCAT GGCTGGGGCG TGTTTGCCTT CGTCGGTATG
GCGCTGGCCT ATTTCGCTTA TCGGCACAAC CTGCCGCTGG CCCTGCGTTC GGCGCTGTAT
CCGCTGATTG GTAAACGCAT CAATGGTCCT ATCGGTTATG CCGTCGATGG CTTCGGCATC
ATTGCGACCA TCTTCGGTCT CGGCGCAGAC ATGGGCTTCG GGGTGCTGCA CCTCAACTCC
GGTCTGGATT ACCTGTTCGG CGTGGCGCAC ACCCACTGGA TTCAGGTCGG TCTGATTACC
CTGATGATGG GCGCGGCGAT TCTGGTAGCG ATCGCCGGTG TCGACAAGGG CGTGCGCGTC
ATGTCCGACA TCAATATGTT GCTGGCCTGC GCGCTGCTGC TGTTCGTGCT GTTTGCCGGC
CCGACTCAGC ACTTGCTCAA CACGCTGGTG CAGAACATCG GTGACTACCT GGGCGCTCTG
CCGAGCAAGA GTTTCGACGT GTATGCCTAT AACGAGCCGA GTGACTGGCT GGGCGGCTGG
ACGGTGTTCT ATTGGGCCTG GTGGATTGCC TGGGCGCCGT TTGTGGGCCT GTTCATTGCG
CGTATTTCCC GTGGCCGGAC CATCCGTGAG TTTGTCTTCG GTGTCTTGCT GATCCCGCTG
GGCTTCACCC TGGCGTGGAT GTCGATCTTC GGTAACAGCG CGATCGATCA AGTGCTCAAC
CATGGCATGA CTGCGCTGGG CCAATCGGCT ATCGATGATC CGTCGATGAC CCTGTACCTG
CTGCTGGAAA CCTATCCGTG GAGCAAGACG GTGATTGCCG TCACGGTGTT CATCAGCTTC
GTGTTCTTCG TCACCTCGGC CGACTCGGGC ACGGTGGTGC TGTCGACGCT GTCAGCCAAA
GGTGGCAACC CTGACGAAGA CGGTCCGAAA TGGCTGCGGG TGTTCTGGGG TGTGGCCACG
GCGCTGATCA CCAGTGGCCT GTTGTTCTCG GGCAGCATCG ATGCACTGAA ATCGGCTGTA
GTGCTGACGT CGTTGCCGTT CTCGCTGATT CTGTTGCTGA TGATGTGGGG CTTGCACAAG
GCGTTCGTCA TGGAGTCGCA GCGCAAGATC GCGCAGTTGT ACTCGCTGGC GCCGGTATCC
GGTTCACGAC GCGGCGGCTG GCGTCAGCGT CTGAGCCAGG CGGTGCATTA CCCGTCGCGA
GACGAGGTGT ACCGCTTCCT TGATCAGACC GTGCGTCCGG CGATTGAAGA AGTGACAGCG
GTGTTCGTCG AGAAGGGCTT GAACGTGGTC AACGTCCCCG ATCCGTCCAA CGACTCGGTG
ACCCTGGAAA TCGGTCACGG CGAAGAGCGT CCGTTCATCT ACCAGGTGCA GATGAAAGGC
TTCTTCACCC CGTCGTTCGC CCGTGGCGGC ATGGGCTCCA AGCAATTGAA CAACCGCCGC
TACTACCGCG CCGAGGTTCA CTTGAGCGAG GGCAGTCAGG ACTACGACCT GGTGGGTTAC
ACCAAGGAAC AAGTCATCAA CGACGTGCTC GATCAGTACG AACGGCATAT GCAGTTCCTG
CACCTGGTGC GTTGA
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| Protein sequence | MSSASSSSSG MVRMNAPVFY FAASFILIFG IVVIAFPQAS GEWLLAAQNW AANTVGWYYM
MVMTLYLVFV VVTALSGFGK IKLGADHDEP EFSYLSWAGM LFAAGISITL FFFCVSEPLT
HLLQPPQGEG GTAEAARQGM QLLFLHWGLH GWGVFAFVGM ALAYFAYRHN LPLALRSALY
PLIGKRINGP IGYAVDGFGI IATIFGLGAD MGFGVLHLNS GLDYLFGVAH THWIQVGLIT
LMMGAAILVA IAGVDKGVRV MSDINMLLAC ALLLFVLFAG PTQHLLNTLV QNIGDYLGAL
PSKSFDVYAY NEPSDWLGGW TVFYWAWWIA WAPFVGLFIA RISRGRTIRE FVFGVLLIPL
GFTLAWMSIF GNSAIDQVLN HGMTALGQSA IDDPSMTLYL LLETYPWSKT VIAVTVFISF
VFFVTSADSG TVVLSTLSAK GGNPDEDGPK WLRVFWGVAT ALITSGLLFS GSIDALKSAV
VLTSLPFSLI LLLMMWGLHK AFVMESQRKI AQLYSLAPVS GSRRGGWRQR LSQAVHYPSR
DEVYRFLDQT VRPAIEEVTA VFVEKGLNVV NVPDPSNDSV TLEIGHGEER PFIYQVQMKG
FFTPSFARGG MGSKQLNNRR YYRAEVHLSE GSQDYDLVGY TKEQVINDVL DQYERHMQFL
HLVR
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