| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4815 |
|---|
| Symbol | |
|---|
| ID | 3370365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5710364 |
|---|
| End bp | 5712184 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637655182 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_237880 |
|---|
| Protein GI | 66048039 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCGAAA ATCTACGTAA CATCGCCATC ATTGCTCACG TTGACCATGG TAAGACCACC
CTGGTAGACA AACTCCTGCG TCAATCCGGC ACTCTGGAGC GCGGCGAGCT CAACGACGAA
CGCGTGATGG ACTCCAACGA CCAGGAGAAA GAGCGCGGTA TTACCATTCT CGCGAAGAAC
ACCGCGATCA ACTGGAATGG CTACCACATC AACATCGTGG ACACCCCGGG CCACGCCGAC
TTCGGTGGTG AAGTAGAGCG CGTGATGTCG ATGGTCGACT CCGTACTGCT GCTGGTCGAT
GCCCAGGACG GCCCTATGCC GCAAACCCGT TTCGTGACCA AGAAGGCTTT CGAAGCCGGC
CTGCGTCCGA TCGTGGTCAT CAACAAGGTT GACCGTCCAG GCGCACGTCC GGACTGGGTT
CTGGACCAGA TCTTCGACCT GTTCGACAAC CTGGGTGCCA CTGAAGAACA GCTGGACTTC
AAAGTCGTCT ACGCCTCGGC CCTGAACGGC ATTGCCGGTC TGGAACACAC CGCCATGGCT
GAAGACATGA CCCCGCTGTA CCAGGCGATC GTCGATCACG TCCCTGCGCC AAAGGTTGAC
CGTGACGGTC CGTTCCAGAT GCAGATTTCC GCACTGGATT ACAACAGCTT CCTGGGCGTC
ATCGGTGTTG GCCGTATCGC TCGTGGTCGC GTCAAGCCGA ACACTCCGGT GGTTGCCATT
GACGTCAACG GCAAGAAGCG TAACGGCCGT ATCCTGAAAC TGATGGGTCA CCACGGTCTG
CACCGCATCG ACGTTGAAGA AGCAGCTGCC GGCGACATCG TCTGCATCAG CGGCTTCGAC
CAGCTGTTCA TCTCCGACAC TCTGTGCGAC CCACTGAACG TCGAAGCGAT GAAGCCGCTG
ACCGTTGACG AACCTACCGT TTCGATGACC TTCCAGGTTA ACGATTCGCC GTTCTGCGGT
AAGGAAGGCA AGTTCGTCAC CAGCCGTAAC ATCAAGGAGC GTCTGGACAA GGAACTGCTC
TACAACGTTG CTCTGCGCGT TGAAGAAGGC GACACCGCCG ACAAGTTCAA GGTCTCCGGC
CGTGGTGAGC TGCACCTCTC AGTACTGATC GAAACCATGC GTCGCGAAGG CTTCGAAATG
GGTGTTGGTC GTCCTGAAGT GATCATCCGC ATGGTTGACG GCGTCAAGCA CGAACCGTAC
GAAAACGTCA CCATCGACCT GCCTGAAGAA GCGCAGGGCG CGATCATGGA GCAAATGGGT
AACCGTAAAG GCGACCTGAC CAACATGGTT CCGGATGGCA AGGGCCGTGT GCGCCTTGAG
TACAACATCC CGGCACGTGG CCTGATCGGT TTCCGTAACG AGTTCCTGAC CCTGACTTCC
GGCGCAGGCA TCCTGACCAG CATCTTCGAC CGTTACGACG TGATGAAGTC GGGCGACATG
TCCGGCCGTC AGAACGGCGT TCTGGTTTCG GTTGCTACCG GCAAGGCGCT GACCTACTCC
CTGGAAACAC TGCAAGCCCG TGGCAAGCTG TTCCTGGGTC ATGGCGAAGA CGTGTACGAA
GGTCAGATCG TCGGCATCAA CAGCCGCGAC AACGACCTGG GTGTCAACCC AACCAAAGGC
AAGAAGCTCG ACAACATGCG TGCTTCCGGT AAAGACGAAA CCATCGCTCT GGTTCCGCCT
ATCCGTTTCA CTCTGGAACA AGCGCTGGAA TTCGTACAAG AAGACGAACT CTGCGAAGTG
ACGCCAAAGT CGATCCGCCT GCGTAAGAAA ATCCTTGGTG AAAGCGAGCG TACTCGTGCT
GCCAAGAAGT CGGGCAACTG A
|
|---|
| Protein sequence | MIENLRNIAI IAHVDHGKTT LVDKLLRQSG TLERGELNDE RVMDSNDQEK ERGITILAKN
TAINWNGYHI NIVDTPGHAD FGGEVERVMS MVDSVLLLVD AQDGPMPQTR FVTKKAFEAG
LRPIVVINKV DRPGARPDWV LDQIFDLFDN LGATEEQLDF KVVYASALNG IAGLEHTAMA
EDMTPLYQAI VDHVPAPKVD RDGPFQMQIS ALDYNSFLGV IGVGRIARGR VKPNTPVVAI
DVNGKKRNGR ILKLMGHHGL HRIDVEEAAA GDIVCISGFD QLFISDTLCD PLNVEAMKPL
TVDEPTVSMT FQVNDSPFCG KEGKFVTSRN IKERLDKELL YNVALRVEEG DTADKFKVSG
RGELHLSVLI ETMRREGFEM GVGRPEVIIR MVDGVKHEPY ENVTIDLPEE AQGAIMEQMG
NRKGDLTNMV PDGKGRVRLE YNIPARGLIG FRNEFLTLTS GAGILTSIFD RYDVMKSGDM
SGRQNGVLVS VATGKALTYS LETLQARGKL FLGHGEDVYE GQIVGINSRD NDLGVNPTKG
KKLDNMRASG KDETIALVPP IRFTLEQALE FVQEDELCEV TPKSIRLRKK ILGESERTRA
AKKSGN
|
|---|
| |