| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4404 |
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| Symbol | |
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| ID | 3369944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 5266307 |
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| End bp | 5267320 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637654764 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_237472 |
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| Protein GI | 66047631 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.558017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.835067 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCAG TACGCATCGG CCCATATACA GTGCAAAACG GCTTGATCCT CGCCCCGATG
GCGGGCGTCA CCGACCAGCC TTTCCGTCAG CTGTGCCGAA GACTCGGTGC CGGCCTGGTG
GTTTCGGAGA TGGTCACCAG TGACATGAGC CTGTGGAACA GCCGCAAATC GCGTCTGCGC
ATGATCCACG AAGGTGATCC CGAGCCGCGC TCGGTACAGA TCGCCGGTGG TGATCCGCAG
ATGCTGGCAG ACGCAGCACG TGCCAATGTC GAACTGGGCG CCCAGATCAT CGACATCAAC
ATGGGTTGCC CGGCCAAGAA AGTCTGTAAC AAGGCGGCTG GCTCGGCGCT GTTGAAGGAC
GAGCAACTGG TCAACGACAT CCTGCAGGCC GTCGTGGCTG CAGTCGATGT ACCGGTCACG
CTGAAGATCC GCACCGGATG GGATCGCGAC AACCGAAATG GCCTGACAGT GGCGAAAATC
GCCGAGCAGG CGGGCATCAC GGCACTGGCG GTACACGGGC GAACCCGTGC CGACCTGTAC
ACCGGCGAGG CCGAGTACGA CACCATTGCC CTGATCAAAC AGGCCGTGTC GATACCGGTC
TTTGCCAATG GCGACATCGA TTCACCGGAA AAGGCCCGGC ACGTGCTGAA GGCTACCGGT
GCAGACGGAT TACTGATTGG CAGGGCCGCA CAGGGGCGTC CCTGGATTTT TCGCGAGATA
GAACACTTCC TGCGTACCGG AGAAACACTC CCGGCGCCGC AGTCGAGTGA AGTGGAACGC
ATTCTGCTTG AGCATCTGGC AGCGCTCCAC GTTTTCTATG GAGACGTGAT GGGCGTGCGC
ATTGCACGCA AACACGTCAG TTGGTATCTC GCAACGCTGC CGGGCGCCAG AGAGTTTCGC
GCCCACTTCA ATCGTTTGGA AGATACGGAA GCACAGTGCG CCAACGTCCG GGAGTTCTTC
AGCCAAGGCT GCAAGGGCCC GGATAACGAG AATGATAAAG AGGTGGCCGC ATGA
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| Protein sequence | MSAVRIGPYT VQNGLILAPM AGVTDQPFRQ LCRRLGAGLV VSEMVTSDMS LWNSRKSRLR
MIHEGDPEPR SVQIAGGDPQ MLADAARANV ELGAQIIDIN MGCPAKKVCN KAAGSALLKD
EQLVNDILQA VVAAVDVPVT LKIRTGWDRD NRNGLTVAKI AEQAGITALA VHGRTRADLY
TGEAEYDTIA LIKQAVSIPV FANGDIDSPE KARHVLKATG ADGLLIGRAA QGRPWIFREI
EHFLRTGETL PAPQSSEVER ILLEHLAALH VFYGDVMGVR IARKHVSWYL ATLPGAREFR
AHFNRLEDTE AQCANVREFF SQGCKGPDNE NDKEVAA
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