Gene Psyr_4239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4239 
Symbol 
ID3369779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp5051620 
End bp5052630 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content60% 
IMG OID637654599 
Productbinding-protein dependent transport system inner membrane protein 
Protein accessionYP_237307 
Protein GI66047466 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0349667 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAGTT TTATCGCCCG CCGAGTGGGG TTGCTGATAC CCACTTTCTT CGGCATCACC 
TTATTGACCT TCGCCCTGAT TCGTCTGATT CCGGGCGATC CGGTCGAAGT CATGATGGGT
GAGCGCCGTG TCGATCCGGA AATGCACGCT CAGGCCATGG AGCGTCTGGG TCTGAACAAA
CCCCTCTACG CCCAGTACAT CGATTACATC GGCAAGCTCG CCCAGGGCGA CCTCGGTGAA
TCGCTGCGTA CGCGCACCAG TGTCTGGTCC GAATTCACTT CGCTGTTCCC GGCAACCCTG
GAGTTGTCGC TGGCGGCGCT GATTTTCGCG GGTATTCTCG GCCTGCTGGC CGGGGTGATC
GCCGCACTCA AGCGAGGGTC CCTGTTCGAC CATGGGGTCA TGGGGATTTC CCTCGCCGGT
TATTCCATGC CGATCTTCTG GTGGGGCCTG ATCCTCATCA TGTTCTTCTC GGTAACGCTG
GGCTGGACCC CGGTTTCCGG GCGCATCGAC CTGCTGTACG ACATTCCGCC GGTCACCGGC
TTCATGCTGA TCGACACGCT GCTCAGTGAC GAACAGGGTT CGTTCCTCGA TGCCCTGCAC
CACATGATTC TGCCGGCCAT CGTACTGGGC ACCATCCCGC TCGCGGTGAT CGCCCGGATG
ACTCGCTCGT CGATGCTCGA AGTGCTGCGT GAAGACTACG TGCGTACCGC CAGAGCCAAA
GGCCTGTCGC CTGCCCGTGT GGTATTCGTT CATGGCCTGC GCAATGCGCT GATTCCGGTA
CTGACCGTGT TCGGTCTGCA AATCGGTACC TTGCTGGCCG GTGCGGTACT GACCGAAACG
ATCTTCTCCT GGCCGGGTAT CGGCAAGTGG TTGATCGAAG CCATTGGCGC CCGGGACTAC
CCGGTCGTGC AAAACGGCAT TCTGCTGATC GCCTGTCTGG TGATCCTGGT CAATTTCGTG
GTGGATATCC TCTACGGCTT TGCCAACCCA CGCATTCGTC ACCAGCGCTG A
 
Protein sequence
MFSFIARRVG LLIPTFFGIT LLTFALIRLI PGDPVEVMMG ERRVDPEMHA QAMERLGLNK 
PLYAQYIDYI GKLAQGDLGE SLRTRTSVWS EFTSLFPATL ELSLAALIFA GILGLLAGVI
AALKRGSLFD HGVMGISLAG YSMPIFWWGL ILIMFFSVTL GWTPVSGRID LLYDIPPVTG
FMLIDTLLSD EQGSFLDALH HMILPAIVLG TIPLAVIARM TRSSMLEVLR EDYVRTARAK
GLSPARVVFV HGLRNALIPV LTVFGLQIGT LLAGAVLTET IFSWPGIGKW LIEAIGARDY
PVVQNGILLI ACLVILVNFV VDILYGFANP RIRHQR