| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4217 |
|---|
| Symbol | |
|---|
| ID | 3369757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5022527 |
|---|
| End bp | 5023450 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637654577 |
|---|
| Product | peptidase S33, tricorn interacting factor 1 |
|---|
| Protein accession | YP_237285 |
|---|
| Protein GI | 66047444 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR01250] proline-specific peptidases, Bacillus coagulans-type subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.7959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATA TGACGATCAA GGAAGGTTTT GCGCCCTTTG GCGACTATCA GACGTGGTAT
CGCATCACAG GCGACCTGCA CGGTCCCGGC ACACCACTGG TCATTCTGCA CGGCGGCCCC
GGTTGTACGC ACGATTACGT CGATGCGTTC AAGGACATCG CCAGCACTGG CCGGGCCGTT
ATCCATTACG ACCAGTTGGG TAACGGAAAG TCGACTCGAC TGCCCCATAA GGGTCGCGAT
TTCTGGACGG TCGATCTGTT CCTGAGCGAA CTCGACAATC TGCTTGCGCA CCTGAGTATC
AAAAACAACT ACGCATTGCT GGGCCAGTCG TGGGGCGGGA TGCTGGCGGC AGAGCATGCC
GTGCGCCAGC CTGCAGGGCT GAAGGCGCTG ATCATCGCCA ACTCCCCCGC AGACATGCTC
ACTTGGGTAA ACGAGGCCAA CCGGCTGCGC GAGGATCTGC CAGCCGACGT GCAGGCTGCG
TTGCTCAAGC ACGAAGAGGC GGGAACATTG AAAGACCCGG AATACCTGAA AGCCTCGCGA
GCATTCTATG ACCGTCATGT CTGCCGCATC ACACCGTGGC CGGAGGAGGT AAAACGTACC
TTCGACGCGA TTGACGCCGA TCCGACCGTG TACCACGCCA TGAATGGCCC TACCGAGTTT
CACGTCATCG GTACGATGAA GAACTGGACC ATCGTTGATC GCTTGAAGCT CATCAATGTT
CCTGCCTTAC TGATTTCCGG GAAGTATGAC GAAGCCACAC CGCTGGTCGT GAAGCCCTAT
GTGGATAACG TCCCCGACAT CAGTTGGTCT GTCTTCGAAG AGTCCAGTCA TATGCCCCAT
GTAGAGGAGC GAATGGCCTG TATGGGATGC ATCGCAGGTT TTCTGGACAA GCTGGTCGTT
ACGGGTAACG AGTTTGCGGC TTAA
|
|---|
| Protein sequence | MADMTIKEGF APFGDYQTWY RITGDLHGPG TPLVILHGGP GCTHDYVDAF KDIASTGRAV
IHYDQLGNGK STRLPHKGRD FWTVDLFLSE LDNLLAHLSI KNNYALLGQS WGGMLAAEHA
VRQPAGLKAL IIANSPADML TWVNEANRLR EDLPADVQAA LLKHEEAGTL KDPEYLKASR
AFYDRHVCRI TPWPEEVKRT FDAIDADPTV YHAMNGPTEF HVIGTMKNWT IVDRLKLINV
PALLISGKYD EATPLVVKPY VDNVPDISWS VFEESSHMPH VEERMACMGC IAGFLDKLVV
TGNEFAA
|
|---|
| |