| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4187 |
|---|
| Symbol | |
|---|
| ID | 3369726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4979980 |
|---|
| End bp | 4981884 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637654547 |
|---|
| Product | peptidase M41, FtsH |
|---|
| Protein accession | YP_237255 |
|---|
| Protein GI | 66047414 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000128423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.66671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA ATTTGATCCT GTGGTTGATC ATCGCGGCTG TCCTTGTGAC GGTGATGAAC
AACTTCTCCA GCCCGAACGA GCCGCAGAAC CTCAACTATT CCGAGTTCAT CCAGCAGGTC
AAGGATGGCA AGGTCGAGAA GGTTTCTGTC GACGGCTACG TCATTACGGG CAAGCGCAGC
GATGGCGACA CCTTCAAGAC CATCCGCCCG AACATCCCGG ACAATGGCCT GATCGGTGAT
CTGGTCAGCA ATAACGTCGT GATCGAAGGC AAGCAGCCTG AGCAGCAGAG CATCTGGACC
CAGTTGCTGG TGGCCAGCTT CCCGATACTG GTGATCATCG CGGTGTTCAT GTTCTTCATG
CGCCAGATGC AGGGCGGGGC GGGCGGCAAG GGCGGCCCGA TGAGCTTCGG CAAGAGCAAG
GCGCGTCTGT TGTCAGAAGA TCAGGTCAAG ACGACCCTGG CTGACGTTGC CGGTTGCGAC
GAAGCCAAGG AAGAAGTGGG CGAGCTGGTC GAATTCCTCC GCGATCCGGG CAAGTTCCAG
CGCCTGGGCG GTCGGATTCC GCGCGGCGTG CTGATGGTCG GCCCTCCGGG TACCGGTAAA
ACGCTGATCG CCAAGGCCAT TGCCGGCGAA GCCAAGGTTC CGTTCTTCAC GATCTCCGGT
TCCGACTTCG TCGAGATGTT CGTGGGTGTT GGTGCGAGCC GCGTTCGCGA CATGTTCGAG
CAAGCCAAGA AACACGCGCC ATGCATCATC TTCATTGACG AAATCGACGC GGTCGGTCGC
CATCGTGGCG CCGGCATGGG CGGTGGTCAT GACGAGCGTG AGCAGACTCT CAACCAGTTG
CTGGTCGAGA TGGACGGTTT TGAAATGAAT GACGGCATCA TTGTCATTGC CGCAACCAAC
CGCCCTGACG TACTGGACCC GGCGCTGCTG CGTCCAGGTC GTTTCGACCG CCAGGTGGTT
GTAGGTCTGC CGGACATTCG TGGCCGCGAG CAGATCCTCA AGGTTCACAT GCGCAAGGTG
CCAATGGGCG AAGACGTCAA CCCGGGCGTT ATCGCTCGCG GTACGCCGGG CTTCTCCGGT
GCGGACCTGG CTAACCTGGT CAACGAAGCT TCGCTGTTCG CTGCTCGCTC CGGCAAGCGC
GTTGTAGAGA TGAAAGAGTT CGAACTGGCC AAGGACAAGA TCATGATGGG CGCCGAGCGC
AAATCGATGG TCATGTCCGA TAAGGAAAAG CGCAACACGG CTTACCACGA GGCGGGTCAC
GCTATCGTCG GTCGTCTGGT GCCAGAGCAT GATCCGGTCT ACAAGGTTTC CATCATCCCG
CGCGGTCGTG CGCTGGGTGT GACGATGTTC CTGCCGGAAG AAGACCGTTA CAGCCTGTCC
AAGCGTGCGT TGATCAGCCA GATCTGCTCG CTGTACGGTG GTCGTATCGC GGAAGAAATG
ACTCTGGGTT TCGATGGCGT CACAACCGGT GCCTCCAATG ACATCATGCG TGCCAGCCAG
ATCGCCCGGA ACATGGTCAC CAAGTGGGGT CTGTCTGAAA AGCTCGGCCC GCTGATGTAC
TCGGAAGATG AAGATGCAGG TTACCTGGGT CGCGGCGGCA GCCAGAACTC CAGTGTTTCC
GGCGATACTG CCAAGCTTAT CGACTCCGAA GTGCGCAGTA TCATCGATCA CTGCTATGGC
ACCGCCAAGC AGTTGTTGAC GGACAATCGC GACAAGCTGG AAGCGATGGC TGACGCGCTG
ATGAAGTATG AAACCATTGA TGCCGACCAG ATCGACGACA TCATGACCGG TCGTACTCCG
CGCGAGCCGC GTGACTGGGG TGGTGGTTCG GGTACCAACG GTACTCCGAT CACGCCTGAC
CCTCGTCCGG AAACTCCGAT TGGCGGTCCT GCTGCCGAGC ACTAA
|
|---|
| Protein sequence | MAKNLILWLI IAAVLVTVMN NFSSPNEPQN LNYSEFIQQV KDGKVEKVSV DGYVITGKRS
DGDTFKTIRP NIPDNGLIGD LVSNNVVIEG KQPEQQSIWT QLLVASFPIL VIIAVFMFFM
RQMQGGAGGK GGPMSFGKSK ARLLSEDQVK TTLADVAGCD EAKEEVGELV EFLRDPGKFQ
RLGGRIPRGV LMVGPPGTGK TLIAKAIAGE AKVPFFTISG SDFVEMFVGV GASRVRDMFE
QAKKHAPCII FIDEIDAVGR HRGAGMGGGH DEREQTLNQL LVEMDGFEMN DGIIVIAATN
RPDVLDPALL RPGRFDRQVV VGLPDIRGRE QILKVHMRKV PMGEDVNPGV IARGTPGFSG
ADLANLVNEA SLFAARSGKR VVEMKEFELA KDKIMMGAER KSMVMSDKEK RNTAYHEAGH
AIVGRLVPEH DPVYKVSIIP RGRALGVTMF LPEEDRYSLS KRALISQICS LYGGRIAEEM
TLGFDGVTTG ASNDIMRASQ IARNMVTKWG LSEKLGPLMY SEDEDAGYLG RGGSQNSSVS
GDTAKLIDSE VRSIIDHCYG TAKQLLTDNR DKLEAMADAL MKYETIDADQ IDDIMTGRTP
REPRDWGGGS GTNGTPITPD PRPETPIGGP AAEH
|
|---|
| |