Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4147 |
Symbol | |
ID | 3369684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4934535 |
End bp | 4936070 |
Gene Length | 1536 bp |
Protein Length | 511 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637654505 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_237215 |
Protein GI | 66047374 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCATG CGCGCCGGCG AATAAGGTGT TTAGCCCCTG CCATGAAACC ATCGCTAGTC TTGAGAATGG GCCAGCAGCT GACGATGACA CCGCAGCTGC AACAGGCAAT CCGCTTACTT CAGCTTTCCA CTCTGGATCT CCAGCAGGAG ATCCAGGAGG CGCTGGAGTC AAACCCTATG CTGGAGCGGC AGGAAGAAGG CGACGACTTC GACCATTCCG ACCCGCTTGC CGACAACATC GAACAAAAGC CCAACCCCGA CGTTCAGGAA CCGACCTATC AGGAATCCGC GCCTACCGTG GACAACCTTG AAGAAGGTGA ATGGAACGAA CGCATTCCCA ACGAGCTGCC CGTCGATACC GCATGGGAAG ACATCTACCA GACCAGCGCC AGCAGCCTGC CAAGCAACGA TGACGACGAG TGGGACTTCA CCACGCGCAC CTCTGTGGGC GAAAGCCTGC AAAGCCACCT GCTGTGGCAA CTGAATGTCG CGCCGATGTC CGACAAGGAC CGTCTGGTAG CGGTTACGCT GATCGACTGC ATCAACAACC AGGGTTATCT CGACGAGACG CTCGATGAGA TTCTCGAGTC CTTCGACCCC GAACTGGACA TCGAGCTCGA CGAGATCGAA GCCGTACTGC ACCGCATCCA GCAGTTTGAA CCTGCCGGCA TCGGCGCTCG CAACCTGAGC GAATGCCTGC TGCTGCAACT GCGCCAGCTG CCAGCAAAAA CACCCTGGCT GACAGAAGCA CAACGCCTGG TCAGCGACTA CATCGACCTG CTCGGAAGCC GCGACTACGG CCAGCTGATG CGACGCATGA AGCTCAAGGA AGACGAGCTG CGTCAGGTCA TCGAACTGGT GCAGAGCCTC AACCCGCGTC CAGGCTCGCA GATCGAATCC ACAGAAGCCG AATACGTCAT TCCGGATGTG ATCGTGCGCA AGGACAATGA ACGCTGGCTG GTCGAACTCA ATCAGGAGTC GGTGCCGCGC CTGCGCGTCA ATCCGCAATA CGCGGGCTTC GTACGGCGCG CCGATACCAG CGCAGACAAC ACCTTCATGC GCAATCAGTT GCAGGAAGCG CGCTGGTTCA TCAAGAGCCT GCAAAGCCGC AACGAAACGT TGATGAAGGT CGCCACGCAA ATCGTCGAAC ATCAGCGCGG CTTTCTCGAG TACGGTGACG AGGCCATGAA GCCGCTCGTC CTGCACGACA TCGCCGAGGC AGTGGGCATG CACGAGTCGA CCATCTCGCG CGTAACCACC CAGAAATTCA TGCACACCCC ACGCGGCATT TACGAGCTGA AATACTTCTT CTCAAGCCAT GTGAGCACCT CCGAGGGCGG TGAATGCTCG TCCACGGCAA TTCGCGCAAT CATCAAAAAA CTGGTTGCGG CGGAAAATCA GAAAAAGCCG TTGAGTGATA GCAAGATCGC TGGTTTACTG GAGGCACAAG GCATTCAAGT AGCCCGTCGC ACAGTCGCCA AGTACCGTGA GTCTCTCGGG ATCGCCCCTT CCAGTGAGCG TAAGCGGCTG ATGTGA
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Protein sequence | MAHARRRIRC LAPAMKPSLV LRMGQQLTMT PQLQQAIRLL QLSTLDLQQE IQEALESNPM LERQEEGDDF DHSDPLADNI EQKPNPDVQE PTYQESAPTV DNLEEGEWNE RIPNELPVDT AWEDIYQTSA SSLPSNDDDE WDFTTRTSVG ESLQSHLLWQ LNVAPMSDKD RLVAVTLIDC INNQGYLDET LDEILESFDP ELDIELDEIE AVLHRIQQFE PAGIGARNLS ECLLLQLRQL PAKTPWLTEA QRLVSDYIDL LGSRDYGQLM RRMKLKEDEL RQVIELVQSL NPRPGSQIES TEAEYVIPDV IVRKDNERWL VELNQESVPR LRVNPQYAGF VRRADTSADN TFMRNQLQEA RWFIKSLQSR NETLMKVATQ IVEHQRGFLE YGDEAMKPLV LHDIAEAVGM HESTISRVTT QKFMHTPRGI YELKYFFSSH VSTSEGGECS STAIRAIIKK LVAAENQKKP LSDSKIAGLL EAQGIQVARR TVAKYRESLG IAPSSERKRL M
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