Gene Psyr_4009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4009 
Symbol 
ID3369545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4775378 
End bp4776838 
Gene Length1461 bp 
Protein Length486 aa 
Translation table11 
GC content63% 
IMG OID637654367 
ProductRND efflux system, outer membrane lipoprotein, NodT 
Protein accessionYP_237077 
Protein GI66047236 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0874069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0174443 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGT CATTGATCTC ACTTGCAGTT ACCGCGTTCA TTCTCGGCGG CTGCTCTTTG 
ATCCCCGATT ACAAGCAGCC GCAAGCACCG GTCGCGGCAC AATATCCGCA AGGGCCGGCG
TACTCGCCGG TCGAAGGCGC CAAAATGGCC GCCGCGGAGC AAGGCTGGCG GCACTTCTTC
AATGACCCGG CGCTGCAACA GCTGATTCAG ACTGCACTGC TCAACAACCG TGACCTGCGG
GTTGCGGCGC TGAACATCGA CGCCTACCGC GCCCAGTACC GTATCCAGCG CTCGGACCTG
TTCCCTGCTG TTTCGGCCAC CGGTAGCGGC TCACGTCAGC GCGTGCCGGG TGATCAGTCG
CAGACCGGTC AGCCAGGCAT CACCAGCAGC TACTCGGCCA CCCTGGGTGT CAGCTCGTAC
GAGCTGGACC TCTTCGGCCG GGTCCGCAGC CTCAGCGAGC AGGCGCTGGA GACCTACTTC
GCCAGCGAGG AAGCGCGTCG CAGCACCCAG ATCAGTCTGG TGGCCAGCGT CGCCAATGCC
TACATGACCT GGCAGGCCGA CAAGGAACTG CTCAAGCTGA CGCAGGACAC CCTGAAGACC
TACGAAGAAA GCTTCCGTCT GACCTCGCGC GCCAGCGAAG TCGGCGTTTC TTCGGCACTG
GACCTGAGCC AGTCGCGCAC CGCCGTCGAA AGCGCGCGCG CCAAACTGGC CCAGTACCAG
CGCCTGGTTG CCCAGGATCA GAACAGCCTG GTGCTGCTGC TTGGCACCAG CCTGCCCGAC
AACCTGCCGG CCAGCCACTT GCTCGATTCC GACATGCTGA CCGAAATGCC GGCAGGCCTG
CCGTCCGACC TGCTGCAGCG TCGTCCGGAC ATTCTCGAGG CCGAGCACTC GCTCAAGGCG
GCCAACGCCA ACATCGGCGC GGCACGTGCA GCGTTCTTCC CGAGCATCAG CCTGACGGCC
AGTGCCGGGA CCAGCAGCAG CGAGCTGTCC GGCCTGTTCA AGGGCGGATC GGGCGCCTGG
CTGTTCCAGC CAAGCATCAA CATCCCGATC TTCAACGCCG GCAACCTGCG CGCCAGCCTG
GACTACTCGA AAATCCAGAA GGAAATCAGC GTCGCCAACT ACGAGAAGGC GATTCAGACC
GCCTTCCAGG AAGTGTCCGA CGGCCTGGCT TCACGCAAGA CCTATGACGA GCAGCTCCAG
GCGCAACGTG ACTTCGTTGC GGCCAACCAG GATTACTACC GTCTGGCCGA ACGTCGCTAC
CGGATCGGCA TCGACAGCAA CCTGACCTTC CTCGACGCCC AGCGCTCGCT GTTCAGTGCG
CAACAAACGC TGATCACCGA TCGCCTGTCG CAGCTGACCA GCGAGGTCAA CCTGTACAAG
GCCCTCGGCG GCGGCTGGTA TGAAAGAACC GGGCAGACCG AAACCATCTC CAAGGAGAAG
CCTTCGGTTC AGTTGTTCTG A
 
Protein sequence
MSKSLISLAV TAFILGGCSL IPDYKQPQAP VAAQYPQGPA YSPVEGAKMA AAEQGWRHFF 
NDPALQQLIQ TALLNNRDLR VAALNIDAYR AQYRIQRSDL FPAVSATGSG SRQRVPGDQS
QTGQPGITSS YSATLGVSSY ELDLFGRVRS LSEQALETYF ASEEARRSTQ ISLVASVANA
YMTWQADKEL LKLTQDTLKT YEESFRLTSR ASEVGVSSAL DLSQSRTAVE SARAKLAQYQ
RLVAQDQNSL VLLLGTSLPD NLPASHLLDS DMLTEMPAGL PSDLLQRRPD ILEAEHSLKA
ANANIGAARA AFFPSISLTA SAGTSSSELS GLFKGGSGAW LFQPSINIPI FNAGNLRASL
DYSKIQKEIS VANYEKAIQT AFQEVSDGLA SRKTYDEQLQ AQRDFVAANQ DYYRLAERRY
RIGIDSNLTF LDAQRSLFSA QQTLITDRLS QLTSEVNLYK ALGGGWYERT GQTETISKEK
PSVQLF