| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3843 |
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| Symbol | |
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| ID | 3369378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4580648 |
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| End bp | 4582939 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637654200 |
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| Product | GGDEF |
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| Protein accession | YP_236911 |
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| Protein GI | 66047070 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTGGC TGGGTTTGAA CGTATTCGCT GACCCACCAG CGGACGTGCA ATTATTGATC
GACTGTAGTC ACAACCTGTT TCTGGTCGCG CTGGCTTACG GCGTGGCCTG TGCTGCGTGC
TTTGCCACGC TGGATATTGC GGACCGTGTC ATCCAGGTCG ACGCCCTCAA AAGCCGTCGC
CTCTGGAAAG CGCTGGGCGC GTTGTGCCTG GCCGGTGGCG TGTGGGCGAT GCATTTCATC
AGTATGCTGG CCTTTCAGGC ACCGCTCAAA ATCGCTTACG ACCTCTCCAT CACGCTGATT
TCCCTTCTGA TCGTATTGAT TACCGCATTG GTGGCCATGC GAGCACTGAC AGTCCCGGAA
CTGACTCTGA GACGCTGCCT GATCAGCGCG GTGGTGATGG GGGTCGGCAT CAGCGTCATG
CACTACCTGG GCATGTCGGC CATGCGCTCC ACTGCCACGC AGTACTACGA GCCGCGGATG
TTCGCCCTGT CGATTCTGGT CGCAGTCCTC TCCAGCATTG CGCTCCTGAC ACTGCCGCGG
CACTTGCGCC AGTACAACGG CATGTTTCAT CAGATGTTCC GATATGCGGT CAGCCTTCTG
CTGGGCGCGG GCCTGTTGAC CATGCACCTG ATGGGCATGA AGGCGCTGCG GCTGGTGATC
CCGGAAGGCA CTGAGCTGCA CGGGCCCGCC ACCGAAAACA GCCAACAGCT GGGGCTGACC
ATCGCGGCCA TCGCCCTGCT GATCATCGCC GGCAGCATCA GTGCGGCAAT GGCTGACAAG
AAACTGCAAG GCAAGGAGCA TGACCTGCAG CGGGTCAATG CACTGCTTAC CCAGCTGGAT
CAGGCACGCG TCTCGCTTCA GCAGGTTGCG CATTACGACC CGCTGACCAA TCTGATCAAC
CGCCGCGGTT TCAATCAGAT CTTCGCCGAG AAGCTGCAGG AGCACACTTA CAACAACGGC
ATGCTCGCAG TGATGTTCCT CGACATCGAC CACTTCAAGC GCATCAATGA CAGCCTGGGC
CATGATGCGG GTGACGAGCT GCTCAAAGTG ATAGCCGACC GCATCCGTGG TGCTACCCGG
GTTCAGGACG TGGTAGCGCG CTTCGGCGGC GATGAATTCT GCATCCTGCT GAGCATTCCG
GACTACGAAG AGGCACGACA CCTGGCCCAT CGAGTCATGC AAAAAATGAA AGAGACCATC
GCGCTGGCAG GAAGACGCAT GGTCATGACC ACCAGTATCG GTATTGCCGT GTTCCCGCGT
GACGGTTCGA CCTGCGATGA GCTGCTCAAG CACGCGGACC TCGCGCTCTA CCAGTCCAAG
GACAAAGGGC GCAACGGCGT CAACTTCTTC AACCCGGCGC TCAAGACCAA GGCCAGTCTG
GAGCTGCAAC TGGAAGAAGA ACTGCGCAAT GCCCTGCGCG AAGGCACGGG GCTGCAGGTG
TACTACCAGC CTATCGTCGA CATGCGCACC GGCCACGTTG CCAAGCTCGA GGCGCTGGTG
CGCTGGAATC ATCCGCACCA CGGCCTGCTG GTACCCGCCC GCTTCATCGG CATTGCCGAA
GCCAACGGCC TGATTGCAGA GCTGGATAAC TGGGTGCTGC GCCGCGCCTG TCACGACCTG
CGCACTCTGC ATCAGGAAGG GCTGGAACAG CTGATCATCT CGGTCAACTG CTCAGCGCTG
ACGCTGGGCC GCAACGAGTT GGTCGAAGAG GTTGAACGGG CGCTGGCCGA TGCTGACGCA
GCGCCTGGAC GGCTGGAACT GGAGGTCACC GAAAATGCCT TGATGGGCAA CATCAGCAAC
ACCATCCTGA TGCTCAAGCA CATTCGCAGC CTGGGTGTTT CCCTGTCGAT CGACGACTTC
GGCACGGGTT ACTCGTCGCT CGCCTATCTC AAGCGGCTGC CACTGGACAC GCTGAAGATC
GATCGTTCGT TCATTATCGA CATTCCCCAG TCACCGCAGG ATATGGAAAT CGTTCAGGCA
ATCCTCGTCA TGGCGCATAC CCTGCGCTTG AAAGTCGTGA CGGAGGGCGT CGAAACCCAG
GCTCAGCTGG AGTTTCTCAG GCAGTTTGGC AGTGATTACG TACAAGGTTA TATGTTCAGC
AGGCCTCAGC CGCTGGAGCG AATCCTGCCC CTCGCCAGAC AGATGAATGA GCGTGAGGCC
AGCTTGCAGT GGTCTGCCCT GCCACCACCG TATGCCCACG GACCTGACAT CGGGATATCA
GAAGCATCGG ATGTGTTCGC CGAACTGTCT GACAGTGACG ATTTCGCCAG TCACAGACCT
GTTCGCACCT GA
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| Protein sequence | MDWLGLNVFA DPPADVQLLI DCSHNLFLVA LAYGVACAAC FATLDIADRV IQVDALKSRR
LWKALGALCL AGGVWAMHFI SMLAFQAPLK IAYDLSITLI SLLIVLITAL VAMRALTVPE
LTLRRCLISA VVMGVGISVM HYLGMSAMRS TATQYYEPRM FALSILVAVL SSIALLTLPR
HLRQYNGMFH QMFRYAVSLL LGAGLLTMHL MGMKALRLVI PEGTELHGPA TENSQQLGLT
IAAIALLIIA GSISAAMADK KLQGKEHDLQ RVNALLTQLD QARVSLQQVA HYDPLTNLIN
RRGFNQIFAE KLQEHTYNNG MLAVMFLDID HFKRINDSLG HDAGDELLKV IADRIRGATR
VQDVVARFGG DEFCILLSIP DYEEARHLAH RVMQKMKETI ALAGRRMVMT TSIGIAVFPR
DGSTCDELLK HADLALYQSK DKGRNGVNFF NPALKTKASL ELQLEEELRN ALREGTGLQV
YYQPIVDMRT GHVAKLEALV RWNHPHHGLL VPARFIGIAE ANGLIAELDN WVLRRACHDL
RTLHQEGLEQ LIISVNCSAL TLGRNELVEE VERALADADA APGRLELEVT ENALMGNISN
TILMLKHIRS LGVSLSIDDF GTGYSSLAYL KRLPLDTLKI DRSFIIDIPQ SPQDMEIVQA
ILVMAHTLRL KVVTEGVETQ AQLEFLRQFG SDYVQGYMFS RPQPLERILP LARQMNEREA
SLQWSALPPP YAHGPDIGIS EASDVFAELS DSDDFASHRP VRT
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