| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3834 |
|---|
| Symbol | |
|---|
| ID | 3369369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4569836 |
|---|
| End bp | 4571527 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637654191 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_236902 |
|---|
| Protein GI | 66047061 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATA ACTTCTGGAA GGACAAGTAC CCGTCCGGTA TCCCTGCCGA TATCAACCCC
GACGAGTACC CTAACGTCCA GGCGGTCCTG AAGCAGTCCT GCCAGCGCTT CGCCGACAAG
CCGGCGTTCA GCAATCTGGG CAAGACCATC ACCTACGGTG AGCTGTATGA GCTGTCCGGC
GCGTTTGCCG CCTGGATTCA GCAACATACC GACCTGCAGC CGGGCGACCG TATCGCCGTG
CAGCTCCCCA ACGTATTGCA GTACCCGATT GCCGTCTTCG GTGCGATTCG CGCCGGGCTG
ATCGTGGTCA ACACCAACCC GCTGTACACC GCGCGGGAAA TGGAACACCA GTTCAATGAC
TCCGGTGCCA AGGCGCTGGT GTGTCTGGCA AACATGGCCC ATCTGGCCGA GAAGGTCGTA
CCCAGGACGC AGATCAGGCA GGTGATTGTC ACCGAAGTGG CCGACATGCT GTCACCGTTC
AAGCGCTTGC TGATCAACAG CGTCATCAAG TACGTGAAGA AAATGGTTCC GGCCTATCAC
TTGCCCAAGG CCATCAAATT CAACGATGTG CTGGGCAAGG GCCGTGGTCA GCCAGTGACC
GACGTGTCGC CCGGCAGCGT CGACGTTGCC GTGCTGCAGT ACACCGGCGG CACCACCGGG
GTGGCCAAGG GGGCAATGCT GACGCACCGC AACCTGATCG CCAACATGCT GCAATGCCGG
GCGCTGATGG CGTCCAACCT GGACGAAGGC TGTGAAATCA TCATCACGCC GCTGCCGCTG
TATCACATCT ACGCCTTCAC CTTTCATTGC ATGGCGATGA TGCTGCTTGG CAATCACAAC
ATCCTGATCA GCAACCCGCG TGACCTGCCG GCCATGGTCA AGGAACTTTC GAAATGGAAG
TTCAGCGGCT TTGTCGGTCT TAACACGCTG TTCGTGGCCC TGTGCAATAG CGACGGCTTC
CGCAACCTCG ATTTCTCGGC GTTGAAAGTC ACCTTGTCCG GCGGCATGGC CTTGCAGCAG
GCCGCCGCCG AGCGCTGGAA GCAGGTGACG GGCTGCCAGG TCTGCGAAGG CTATGGCATG
ACCGAGACCA GTCCGGTGGC CACGGTCAAT CCTTCTCAGT ACGTGCAGAT GGGCAGCATC
GGCATTCCCG TGCCGTCGAC CCTGTGCAAG GTCATCGACG ATGCGGGCAA TGAGCTGGCA
TTCGGTGAAA CCGGCGAGCT GTGCATCAAG GGGCCGCAGG TCATGAAAGG CTACTGGCAG
CGCCAGGAAG CGACCGATGA AATGATCGAC AGCGAAGGCT GGCTGAAGAC CGGCGACATC
GCGATCATCC AGCCTGACGG CTACATCCGG ATTGTCGATC GCAAGAAAGA TATGATCCTG
ATCTCCGGTT TCAATGTGTA CCCCAACGAA CTGGAAGACG TACTGGCGAC ACTTCCCGGC
GTGCTTCAGT GCGCGGCGAT CGGCGTCCCG GACGAGAAGT CGGGCGAGAC CATCAAGGTC
TTCGTGGTGG CCAAACCCGG CGTTACCCTG ACCAAGGAAC AGGTCATGGC GCACATGCGC
GCCAACCTGA CCGGCTACAA AGTGCCGCGC AGCGTCGAAT TCCGCGACGT GCTGCCAACC
ACCAACGTCG GCAAGATCCT GCGTCGCGAG CTGCGTGATG AGGAATTGAA GAAACTGGGT
GTGAAGAAGT AA
|
|---|
| Protein sequence | MIDNFWKDKY PSGIPADINP DEYPNVQAVL KQSCQRFADK PAFSNLGKTI TYGELYELSG
AFAAWIQQHT DLQPGDRIAV QLPNVLQYPI AVFGAIRAGL IVVNTNPLYT AREMEHQFND
SGAKALVCLA NMAHLAEKVV PRTQIRQVIV TEVADMLSPF KRLLINSVIK YVKKMVPAYH
LPKAIKFNDV LGKGRGQPVT DVSPGSVDVA VLQYTGGTTG VAKGAMLTHR NLIANMLQCR
ALMASNLDEG CEIIITPLPL YHIYAFTFHC MAMMLLGNHN ILISNPRDLP AMVKELSKWK
FSGFVGLNTL FVALCNSDGF RNLDFSALKV TLSGGMALQQ AAAERWKQVT GCQVCEGYGM
TETSPVATVN PSQYVQMGSI GIPVPSTLCK VIDDAGNELA FGETGELCIK GPQVMKGYWQ
RQEATDEMID SEGWLKTGDI AIIQPDGYIR IVDRKKDMIL ISGFNVYPNE LEDVLATLPG
VLQCAAIGVP DEKSGETIKV FVVAKPGVTL TKEQVMAHMR ANLTGYKVPR SVEFRDVLPT
TNVGKILRRE LRDEELKKLG VKK
|
|---|
| |