| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3823 |
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| Symbol | |
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| ID | 3369358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4547783 |
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| End bp | 4552615 |
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| Gene Length | 4833 bp |
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| Protein Length | 1610 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637654180 |
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| Product | putative hemolysin-type calcium-binding region |
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| Protein accession | YP_236891 |
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| Protein GI | 66047050 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00466543 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATATTCA ACACAAAAGA CTTCGGAGCA CTGGGCGACG GCGTCACTGA CGATACGGCA
GCCATTCAGG CCGCGATCGA CGCAGCCGCT GCGGCAGGCG GCGGTGAAGT GGTCATGGGC
GCCGGAACCT ACGTCGTGTC CGGTGGCGAG GAGCCTTCGG ATGGCTGCCT GATGCTCAAG
AGCAATGTAA CCCTGTCGGG CGCAGGCATG GGCGAGACGA TCATCAAGCT CGCGGATGGC
TCGGACACCA AGGTGACCGG CATCGTGCGC TCGGCCTATG GCGAAGAAAC CCACGACTTC
GGCATGAAAA ACCTGACGCT GGACGGTAAC CGGGACGCCA CCACCGGCAA GGTGGACGGC
TGGTTCAACG GTTACATTCC AGGCTCTGAC GGCAAGGATT CGAACGTCAC CCTCGACAGC
GTCGAGATCA AGGATTGCTC GGGCTACGGC TTCGACCCGC ACGAGCAGAC CGTCAACATG
GTGATCAAGA ACAGCGTGTC GCATGGCAAC GGCCTGGATG GCTTCGTGGC CGATTACCTG
AGCGACAGCG TGTTTGAAAA CAACGTTGCG TACGACAACG ATCGTCACGG CTTCAACGTG
GTCACCAGCA CCCACGACTT CACCCTGAGC AACAACGTTG CCTATGGCAA TGGCAGCACC
GGCATCGTGG TGCAGCGCGG CAGCGAGAAC ATCCCCTCGC CCGCCAACAT CACCATCACC
GGCGGCGCGG TGTATGGCAA CGCGGCAGAA GGCGTACTGA TCAAGCTGTC CAGCCAGGTT
TCGGTCAGCG GCGTGGACAT CCACGACAAC GGCAACGCCG GCGTGCGCAT TTATGGCAGT
TCCGGGGTGG ATATCTTCGA TAACACCCTG AGCAACAACG CGCTGGGTTC AGCGGTTCCG
GAAATCATCA TTCAGTCCTA CGACGACACC ACAGGCGTGT CCGGCAAGTT CTTCAGCGGC
AGCGACAACC TGATCCGTGG CAACACGATC ACCGGCAGTG ACAACTCCAC CTACGGCGTC
GCCGAGCGCA ACGAAGACGG CACCGACCGC AACAGCATCG TCGGCAACAC CATCAGCCAC
ACCAGCAAGG GGCTGACCCT GGTGTATGGC GATGGCAGCT TTGCCGGTGA TGCGTTCCCG
CTGGTGACCG TCAATGGCAC CGAGGGCAAC GACGTCATCA CCGGTGGCGC GGCCCACGAG
CAGATCTTCG GCCTGGCGGG CAAGGACACC TTGAACGGCG GTTCGGGTGA CGACATCCTG
GTCGGCGGTG CCGGGGCCGA CAAGCTCACC GGCGGCGCGG GAGCCGACAC CTTTCGCTTC
GATCAGTTGA CCGACAGCTA CCGGACGGCG ACCACCAGTT CCACCGATCT GGTCACCGAC
TTCGACATCA GCCAGGACCG CATCGACCTG ACCAATCTGG GCTTCACCGG GCTGGGCAGC
GGCAAGGGCG GTACGCTGAA CATCAGCTAC AACGCCACAC TGGACCGCAC CTACGTCAAA
TCACTCGACG CCGATGCCAG CGGCAACCGC TTCGAGCTAG GCCTGAGCGG CAACCTGAAA
GACACGCTCA ATGCCAGCCA CTTCATCTTC CAGCATGTCG TGGAAGGCAC GGCGGGCGGC
GATACCCTCA CCGGCACCGA CGGCAATGAC GTGCTCAACG GCAATGCCGG TACGGACCGC
ATCGACGGCG GCGCGGGCGC CGACACGATC ACTGGGGGAG CCGATGCCGA CACCCTGACC
GGCGGCGCAG GCGCGGACCT GTTCATCTAC AACTCGCGCC TGGACAGCTA TCGCAATTAC
ACCGCCAGCG GCACCAAGCA AAGCGATACG ATCACCGACT TCAACCCGGC CGAAGACCGC
ATCGACCTGT CCAGCATCGG CCTGCGCGGC ATAGGCGATG GCAGCGCCAA CACCATTTAC
CTGTCGGTCA ATGCCGACGG CAGCAAGACC TACATCAAGA CCGATGCAGT CGACAGCACA
GGCAATCGCT TCGAGATTGC CTTGCAAGGC AACCTGGCCG ACAAACTCAG TGCGTCCAAC
TTCATCTTCT CTACCGCCTC AGCCGCCAAT CAGGCACCAG TGCTCAATAC GCCGCTGATG
GACCAGAACG TTACCGAGCT GAAGGCGTTC TCCTACGCCG TGCAGCCCGG CAGCTTCAGC
GACCCGGACA GCGATACGCT GACCTACAGC GCGACCCTGG CCGATAACAG CGCCCTGCCC
GAGTGGCTGA AGTTCGACAG CAAGACCCTG ACCTTCAGCG GCACACCGGG CGGCACGGCA
TCCGGGCTTT ACTCGGTATT GCTGACTGCG AGCGACGCCA CCGGCGCTTC GGTGGCCGAC
AGTTTTGCCA TCAATGTGGG CAACGTGACG CCGGGGATCC TCACCGGCAC CGAGAACGCC
GAGGCGCTGT ACGGCACCGA AGGCAACGAT ACGATTCTGG GCCTGGGCGG TGACGACACG
CTGCGTGGCG ATACCGGCGC CGACATCATC AACGGTGGCG CAGGACGCGA CGCCCTGTAC
GGTGGCGCCG ATGCCGACAC GTTCGTCTAC AGCGCACTGA CCGACAGCTA CCGCGATTAC
GACGCTGGCG GCCTGACTGC CACCGACACG ATCTATGACT TCACCCCCGG TCAGGACAAG
ATAGACGTCT CCGCACTGGG CTTTCTGGGG CTGGGCAACG GCGAAGACCA CACGCTGTAC
ATGACCCTCA ACGAAACCGG CGACAAGACC TACATCAAGT CCGCCACGGC GGATGCCGAC
GGCAATCGCT TCGAGATCGC CCTGAGCGGC AACCTGATCG ACACCCTCAC CGACGCGGAC
TTCGTATTCG GCCAGCGTGA GGCGCAGGAG ATTCTCTACC TGCCGACCCT GGGCCAGTCC
AACGCGCGCC TGCTGCGCAT GACTGAAGAC GATAACCAGT CCGGCACCTC GGAAATGGTC
AAGGACCTGA CCCGCTACAC CGATTACGAC GTGCGCAGCC AGTTCACCGA CGCCAACGGT
GATGGCATCG ACCTCGCCGT GGGCGGCAGC ACCGTGGTCG GCTACTCGAC CGGCACTCAG
GATGAACAGC GTGTTTCCTG GTGGCTGGTC GACACCGATG AGCCGGGCCC TGCGCTGTTG
CGCGCCACCG AGTTGCTCAA GTCGCAACTG GCGTCGCTGA CCGCCATCGA CAAAGTGACC
ACCGGGATCA TCTGGGGTCA GGGCGAAGAA GCCGCTCAGG AAATCGCCCG CGCCACCGAC
AAGCAGGCGG CGGCCGAGCT GTACAAGGCC TCGACCCTGA AAGTGTTCGA CTACCTGCAC
GCGCAGATCG GTGATTTCAC CGTGTACATC GCCGAAACCG GGCACTACCA GACCGACGCG
GCCAAGGCGC GTGGTTACAC CGACGAAAAG ATCAACGCCA TTGTCGAAGG CGCCGGGTAC
GTCAGAAGCG TCCAGGAAGC CATTGCCACT GAGCGCGCCG ACGTCAAGCT GGCGGTTGAC
TACACCGACC TGCCCCTGCG TTACGAGGTC AACCCGCTGG TTTACCCCGA TGACGTCTGG
CACTTGCATG AAGAGTCCGC CGAGATCGTC GGCCAGCGTC TGGCCGATTT CATCGCCGAT
GACCTGGGTT TTCAGGGCAA CGCCGCTGAC AACAACGACC CGGCGGCCAT TTTCGAAAGT
GGCCAGAACG AAGGTGGCCA TATCTTCGGC ACCAGTGACG ACGACACGCT GGTCGGCAGT
TCCGGCAATG ACGTGCTGGA CGGCGATCAG GGCGCGGACG ACATGAGCGG CGGCGATGGC
AACGATATCT ACGTGGTCGA CAACGCTTTC GATACCGTCA CCGAAAGCAA CGACTCGCCC
TCGCAGGTGG ACACCGTGGT GTCGTCTGTC AGCTGGACGC TGGGCGCCAA CGTGGAAAAC
CTGGTGCTTA CCGGCGTGTC TGCGATCAAC GGCATTGGCA ACGCCGTGAA GAACGTCATC
ATCGGCAATG CCAGTAACAA CATTCTCGAC GGCGCTGCAG GTGCCGACAT GCTGACCGGC
GGCGATGGAT CGGACAGTTA TTACGTCGAC GATGCCGCCG ACCGGGTGGT CGAGACCAAT
ACCGATGCGC AGGTGGGCGG CGTCGATACG GTGTACAGCT CGCTGGCCAG CTACACGCTG
GGGGCCAATC TGGAAAACCT CGTCATCAAC AGCAGCGGGG CCGCCAATGC CACCGGCAAT
GCCCTGGATA ACCTGATTTA CGCAGGCGCT GGCGACAACG TCATGGACGG CCGCGACGGC
AATGACACCG TGTCGTATCT GTTCGCCACC GCCGGCGTCA CCGTTGCGCT GAACACCAGC
GCTCAGCAAG CCACCGGCGG CTCGGGTCTG GACACGCTGA AAGGCACTGA AAACCTGATC
GGCAGCCAGT TTGCCGACAC GCTGACCGGC AACAAGAACG CCAACACCCT GAGTGGCGGC
GATGGCAATG ACACCTTGTC CGGTGGCGCG GGCGACGACG TGCTGATCGG CGGATCAGGC
GCGGATACGC TGATCGGTGG CACCGGCGCA GACCACTACG TGTTCAATGG CATCAGCGAT
ACGGGCCTGG GCGGACTGCG CGACATCATC AATGGCTTCA AGACAGTCGA AGGCGACAAG
CTGGACTTCT CCGGCTTCGA TGCCCGGCCG CTGACCGATG GCCACGATGC CTTCGTGTTC
ATCGGCAACG CGGCGTTCAG CGCCAACAAC AGCGGTGAGC TGCGTTTTGC CGACGGCGTG
CTATACGGCA ACATCGATGA CAACGTCGGC GCGGACTTCG AAATCCAGCT CACAGGCGTG
CAGACGCTGC AGGCCGCCGA CATCATTGTC TGA
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| Protein sequence | MIFNTKDFGA LGDGVTDDTA AIQAAIDAAA AAGGGEVVMG AGTYVVSGGE EPSDGCLMLK
SNVTLSGAGM GETIIKLADG SDTKVTGIVR SAYGEETHDF GMKNLTLDGN RDATTGKVDG
WFNGYIPGSD GKDSNVTLDS VEIKDCSGYG FDPHEQTVNM VIKNSVSHGN GLDGFVADYL
SDSVFENNVA YDNDRHGFNV VTSTHDFTLS NNVAYGNGST GIVVQRGSEN IPSPANITIT
GGAVYGNAAE GVLIKLSSQV SVSGVDIHDN GNAGVRIYGS SGVDIFDNTL SNNALGSAVP
EIIIQSYDDT TGVSGKFFSG SDNLIRGNTI TGSDNSTYGV AERNEDGTDR NSIVGNTISH
TSKGLTLVYG DGSFAGDAFP LVTVNGTEGN DVITGGAAHE QIFGLAGKDT LNGGSGDDIL
VGGAGADKLT GGAGADTFRF DQLTDSYRTA TTSSTDLVTD FDISQDRIDL TNLGFTGLGS
GKGGTLNISY NATLDRTYVK SLDADASGNR FELGLSGNLK DTLNASHFIF QHVVEGTAGG
DTLTGTDGND VLNGNAGTDR IDGGAGADTI TGGADADTLT GGAGADLFIY NSRLDSYRNY
TASGTKQSDT ITDFNPAEDR IDLSSIGLRG IGDGSANTIY LSVNADGSKT YIKTDAVDST
GNRFEIALQG NLADKLSASN FIFSTASAAN QAPVLNTPLM DQNVTELKAF SYAVQPGSFS
DPDSDTLTYS ATLADNSALP EWLKFDSKTL TFSGTPGGTA SGLYSVLLTA SDATGASVAD
SFAINVGNVT PGILTGTENA EALYGTEGND TILGLGGDDT LRGDTGADII NGGAGRDALY
GGADADTFVY SALTDSYRDY DAGGLTATDT IYDFTPGQDK IDVSALGFLG LGNGEDHTLY
MTLNETGDKT YIKSATADAD GNRFEIALSG NLIDTLTDAD FVFGQREAQE ILYLPTLGQS
NARLLRMTED DNQSGTSEMV KDLTRYTDYD VRSQFTDANG DGIDLAVGGS TVVGYSTGTQ
DEQRVSWWLV DTDEPGPALL RATELLKSQL ASLTAIDKVT TGIIWGQGEE AAQEIARATD
KQAAAELYKA STLKVFDYLH AQIGDFTVYI AETGHYQTDA AKARGYTDEK INAIVEGAGY
VRSVQEAIAT ERADVKLAVD YTDLPLRYEV NPLVYPDDVW HLHEESAEIV GQRLADFIAD
DLGFQGNAAD NNDPAAIFES GQNEGGHIFG TSDDDTLVGS SGNDVLDGDQ GADDMSGGDG
NDIYVVDNAF DTVTESNDSP SQVDTVVSSV SWTLGANVEN LVLTGVSAIN GIGNAVKNVI
IGNASNNILD GAAGADMLTG GDGSDSYYVD DAADRVVETN TDAQVGGVDT VYSSLASYTL
GANLENLVIN SSGAANATGN ALDNLIYAGA GDNVMDGRDG NDTVSYLFAT AGVTVALNTS
AQQATGGSGL DTLKGTENLI GSQFADTLTG NKNANTLSGG DGNDTLSGGA GDDVLIGGSG
ADTLIGGTGA DHYVFNGISD TGLGGLRDII NGFKTVEGDK LDFSGFDARP LTDGHDAFVF
IGNAAFSANN SGELRFADGV LYGNIDDNVG ADFEIQLTGV QTLQAADIIV
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