Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3756 |
Symbol | actP |
ID | 3369291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 4472506 |
End bp | 4474164 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637654114 |
Product | acetate permease |
Protein accession | YP_236825 |
Protein GI | 66046984 |
COG category | [R] General function prediction only |
COG ID | [COG4147] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR02711] cation/acetate symporter ActP |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.574544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.130195 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCCGGC GCCTATCAGC AGCACTTGGC CTGGCCGCCT TCGCGCCGAC CCTCTGGGCG GCAGACGCGT TGACGGGTGC AGTGCAGAAA CAACCCCTGA ACGTCGCCGC GATCGTCATG TTCGTGGTCT TCGTCGCTTT CACGCTGTAC ATCACCTACT GGGCATCGAA AAAGAACAAG ACAGCGTCGG ACTATTACTC GGCAGGTGGC AAGATCACCG GCTTCCAGAA CGGTCTGGCG ATCGCCGGTG ACTACATGTC GGCAGCGTCC TTTCTGGGTA TTTCCGCGCT GGTCTACACC TCCGGCTACG ATGGCCTGAT CTACTCGATC GGCTTCCTGG TAGGCTGGCC GATCATCCTG TTCCTGATCG CCGAACGCCT GCGCAACCTG GGTAAATACA CCTTTGCCGA TGTGGCGTCG TACCGCCTCA AGCAAAAGGA AATTCGCACC CTGTCTGCCT GCGGCTCACT GGTGGTGGTG GCGTTTTACC TGATTGCGCA GATGGTCGGT GCCGGCAAGC TGATCCAGTT GCTGTTCGGT CTGGACTACG CCGTTGCGGT GGTGCTGGTC GGTATCCTGA TGTGCCTCTA TGTGCTGTTC GGCGGCATGC TCGCTACCAC CTGGGTGCAG ATCATCAAGG CGGTGATGTT GCTGTCCGGT GCGTCGTTCA TGGCATTGAT GGTCATGAAG CACGTCAACT TCGACTTCAA CATGCTGTTC TCCGAAGCGA TCAAGGTTCA CCCCAAAGGT GAAGCGATCA TGAGCCCTGG CGGGCTGGTG AAAGACCCGA TCTCGGCGTT CTCGCTGGGT CTGGCCCTGA TGTTCGGTAC TGCGGGCCTG CCACACATCC TGATGCGCTT CTTCACCGTG AGCGATGCCA AGGAAGCGCG CAAGTCGGTG CTCTACGCAA CCGGCTTTAT CGGTTACTTC TACATCCTGA CCTTCATCAT CGGTTTCGGC GCGATCCTGC TGGTCAGCAC CAATCCGGCG TTCAAGGATG CAGCAGGCGC CTTGTTGGGC GGTAACAACA TGGCTGCGGT TCACCTGGCC GATGCGGTCG GTGGCAGTCT GTTCCTGGGC TTCATCTCGG CAGTCGCTTT CGCCACCATT CTGGCAGTGG TTGCCGGTCT GACCCTGGCG GGTGCTTCGG CGGTTTCCCA CGACTTGTAT GCCAGCGTCA TCAAGGCAGG CAAAGCCAAC GAGAAGGACG AGATCCGTAT CTCGAAAATC ACCACCATTG CCCTGGCGGT CGTGGCGATC TTTCTGGGTA TTGCCTTTGA AAGCCAGAAC ATCGCCTTCA TGGTGGGCCT GGCGTTCTCG GTCGCGGCAA GCTGCAACTT CCCGATTCTG CTGCTTTCCA TGTACTGGAA AAACCTGACC ACCCGTGGCG CCATGATCGG CGGCTGGATG GGCCTGATCA GTGCAGTGGT GCTGATGGTG CTCGGTCCGA CCATCTGGGT GCAGATCCTG CACCACGAGA AAGCCATTTT CCCTTACGAA TACCCGGCGC TGTTTTCCAT CGCCATCGCC TTCGTAGGTA TCTGGTTCTT CTCCATCACC GACAAGTCGA AAGCGGCGGA GGGCGAGCGC GCTCTGTTCT ATCCGCAATT CGTCCGCTCG CAGACGGGGC TGGGTGCCAG TGGTGCGGTT TCGCACTAA
|
Protein sequence | MIRRLSAALG LAAFAPTLWA ADALTGAVQK QPLNVAAIVM FVVFVAFTLY ITYWASKKNK TASDYYSAGG KITGFQNGLA IAGDYMSAAS FLGISALVYT SGYDGLIYSI GFLVGWPIIL FLIAERLRNL GKYTFADVAS YRLKQKEIRT LSACGSLVVV AFYLIAQMVG AGKLIQLLFG LDYAVAVVLV GILMCLYVLF GGMLATTWVQ IIKAVMLLSG ASFMALMVMK HVNFDFNMLF SEAIKVHPKG EAIMSPGGLV KDPISAFSLG LALMFGTAGL PHILMRFFTV SDAKEARKSV LYATGFIGYF YILTFIIGFG AILLVSTNPA FKDAAGALLG GNNMAAVHLA DAVGGSLFLG FISAVAFATI LAVVAGLTLA GASAVSHDLY ASVIKAGKAN EKDEIRISKI TTIALAVVAI FLGIAFESQN IAFMVGLAFS VAASCNFPIL LLSMYWKNLT TRGAMIGGWM GLISAVVLMV LGPTIWVQIL HHEKAIFPYE YPALFSIAIA FVGIWFFSIT DKSKAAEGER ALFYPQFVRS QTGLGASGAV SH
|
| |