Gene Psyr_3738 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_3738 
Symbol 
ID3369273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4452018 
End bp4454147 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content63% 
IMG OID637654096 
ProductATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ 
Protein accessionYP_236807 
Protein GI66046966 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.145176 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0175539 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGAGC AGGCACAACG CGTACTTAAA GACATCTTCG GTTACGACAG CTTTCGTGGT 
CGCCAGGGTG CCATTATTGA GCGTGTAGCC AGCGGTGGTG ATGCGCTGGT GCTGATGCCC
ACCGGTGGCG GCAAGTCCCT GTGTTTTCAG GTGCCGGGGC TGTTGCGTGA CGGGCTGTGC
GTGGTCGTGT CGCCACTCAT CGCGCTGATG GACGACCAGG TTGCCACGCT GGATGAGCTG
GGCGTGTCGG CCGCTGCACT CAACTCGACC CTCAGCGCCG AGCAGCAGCG CGACCTGGCG
AACCGCATTC GTCTGGGCGA AGTCAAAATG CTCTACCTCG CCCCGGAGCG CCTGGTCCAG
CCGCGCATGC TGTCATTCCT GCAAAACCTC AAGATCGCCC TGTTTGCCAT CGACGAAGCG
CACTGCGTGT CGCAATGGGG CCATGACTTC CGCCCTGAAT ACCTGCAACT GGGGCAACTC
GCCGAGCTGT TTCCGGAGGT GCCGCGCATC GCGCTGACCG CCACCGCCGA CAAGCGCACC
CGTGAAGAAA TCGTCACGCG TCTGCACCTG CAGAACGCCG AGCGCTTTCT GTCGAGCTTC
GACCGGCCCA ACATCTTCTA TCGCATCGTG CCCAAGGAAC AGCCGCGCAA GCAACTGCTG
GCGTTTCTTT CCGAGCGCCG CAGCGACGCC GGTATCGTTT ACTGCCTGTC ACGCAAGAAG
GTCGATGAGG TCGCCGTATT CCTGAGTGAC AACGGCTATC CCGCGCTGCC TTATCACGCC
GGTCTGCCGT CCGAAACCCG AGCTGCGAAC CAGAAGCGCT TTCTCAACGA GGAAGGGCTG
ATCATGGTTG CCACCATCGC GTTCGGCATG GGCATCGACA AGCCCAACGT GCGTTTTGTC
GCGCACATGG ACCTGCCCAA ATCGCTTGAG GCTTATTATC AGGAAACCGG CCGGGCAGGG
CGTGATGGCC TGCCCGCCGA TGCCTGGATG GCCTACGGTC TGCAAGACGT GCTGATGCTC
AAGCAGATGC TGCAGAACTC CGAAGGCGAC GAGCGCCACA AACGGCTGGA GCAGCACAAG
CTCGATGCCA TGCTGGCCCT GTGCGAAGAA ACCCGTTGCC GTCGGCAGAC CCTGCTGGCC
TATTTCGACG AAGACATGCC CAACCCGTGC GGCCATTGCG ACAACTGCGT CGATGGCGTG
CAAACCTGGG ATGCCACGGA ACCTGCGCGT CAGGCGCTGT CGGCCATCTA CCGTACCGGC
CAGCGTTATG GCGTCGGTCA TCTGGTTGAC GTGTTGCTCG GCAAGTCCAA CGACAAGGTG
GAGAGCTTCG GTCATCAGCA TCTGTCGGTG TTCGGGGTCG GCAAGGCGCG CACCGAGTCC
GAGTGGCGCT CGCTGTTCCG CCAGCTGGTT GCGCGCGGTC TGGCGGACAT CGACCTTGAA
GGCTATGGCG GCCTGCGCCT CAGCGAGACG TGCCGCCCTT TGCTGCGGGG CGAAGTTTCT
CTGGAACTGC GCCAGGACCT CAAGCCACAA ACCACGTCGA GAAGCAGTTC CGGCAGCCCG
GCCAGTCAAC TGGTGCGTGG CGAAGAGCGC GAGCAGTGGG AAGCCCTGCG CGCGCTGCGC
CGCAAGCTGG CCGAAGAGCA CGGCGTCCCG CCTTACGTTA TTTTCCCGGA CTCGACCCTG
CTGGAGATGC TGCGCAGCAA ACCCGGATCG ATGGCCGAGA TGGCCAAGGT CAGTGGCGTC
GGTGCGCGCA AGCTGGAGCG TTATGGCGAA GCCTTTCTCG AAGTGCTCAG CGGCAAGGCC
GAGGCACCAC GGGTGGTCGC CGATGTGCGT CACGAACTGA TCAGCCTGGC GCGCGCGGGT
ATGACCCCGA CGCAGATCGC CGGTCAGTTG CAGTGCTCGG AAAAGAATGT CTACACCCTG
CTGGCCGAAG CCATCGGCAA GCAGCAGTTA TCCATCGAGC AGGCGCTGGA CTTGCCGGAG
GACCTGCTGG GTGAGGTGCA GGACGCCTTT CTCGACGGCG AAGGCGAACT GCCGCCGGTG
TCGGCGATTG CCGAGCAGTT TGCCGGGCGG GTGCCTGAGG GTGTTTTGTA TTGCGTGCGT
GCAGCGCTGC AATCGGAGTT TGAGGTATAA
 
Protein sequence
MLEQAQRVLK DIFGYDSFRG RQGAIIERVA SGGDALVLMP TGGGKSLCFQ VPGLLRDGLC 
VVVSPLIALM DDQVATLDEL GVSAAALNST LSAEQQRDLA NRIRLGEVKM LYLAPERLVQ
PRMLSFLQNL KIALFAIDEA HCVSQWGHDF RPEYLQLGQL AELFPEVPRI ALTATADKRT
REEIVTRLHL QNAERFLSSF DRPNIFYRIV PKEQPRKQLL AFLSERRSDA GIVYCLSRKK
VDEVAVFLSD NGYPALPYHA GLPSETRAAN QKRFLNEEGL IMVATIAFGM GIDKPNVRFV
AHMDLPKSLE AYYQETGRAG RDGLPADAWM AYGLQDVLML KQMLQNSEGD ERHKRLEQHK
LDAMLALCEE TRCRRQTLLA YFDEDMPNPC GHCDNCVDGV QTWDATEPAR QALSAIYRTG
QRYGVGHLVD VLLGKSNDKV ESFGHQHLSV FGVGKARTES EWRSLFRQLV ARGLADIDLE
GYGGLRLSET CRPLLRGEVS LELRQDLKPQ TTSRSSSGSP ASQLVRGEER EQWEALRALR
RKLAEEHGVP PYVIFPDSTL LEMLRSKPGS MAEMAKVSGV GARKLERYGE AFLEVLSGKA
EAPRVVADVR HELISLARAG MTPTQIAGQL QCSEKNVYTL LAEAIGKQQL SIEQALDLPE
DLLGEVQDAF LDGEGELPPV SAIAEQFAGR VPEGVLYCVR AALQSEFEV