Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3619 |
Symbol | |
ID | 3369154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 4303040 |
End bp | 4304713 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637653978 |
Product | helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal |
Protein accession | YP_236689 |
Protein GI | 66046848 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.219568 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAGG AAATCGGCGG CTTCGCCGCT CTCGAACTTC ATCCAAATAT CGTTGCAGCA GTCGTCGCCA CTGGCTACGA AGAGCCTTCG GCCATTCAGC AGCAATCGAT CCCGATTATT CTCGCCGGTC ACGACATGAT TGGTCAGGCG CAAACCGGTA CGGGTAAAAC CGCCGCGTTC GCACTGCCTA TCCTGCATCG GATCGACCCG AGCAAGCGCG AGCCGCAAGC ACTGATCCTG GCCCCGACCC GCGAACTGGC ACTTCAGGTT GCCACCGCGT TCGAGACCTA CGCAAAACAA ATGCCGGGCG TGACCGTTGT AGCGGTCTAC GGCGGCGCGC CGATGGGCCC TCAGCTCAAG GCTATCCGCA ACGGCGCACA GATCGTCGTC GCTACCCCGG GCCGTCTCTG CGACCACCTG CGTCGTGACG AGAAAGTCCT GGCGACCGTG AACCACCTGG TTCTCGACGA AGCGGACGAA ATGCTCAAGC TGGGCTTCAT GGACGACCTC GAAGTCATCT TCAAGGCCAT GCCTGAAACC CGCCAGACCG TACTGTTCTC GGCCACGCTG CCACAGTCGA TCCGTGCCAT CGCCGAACGC CATCTGCGCG ATCCGAAGCA CGTCAAGATC CAGACCAAGA CCCAGACCGT TACCGCGATC GAGCAGGCTC ACCTGCTGGT TCACGCTGAC CAGAAGACCT CGGCCGTACT GAGCCTGCTG GAAGTCGAAG ACTTCGACGC CCTGATCATG TTCGTCCGCA CCAAGCAGGC GACCCTGGAT CTGGCCAGTG CTCTTGAAGC CAAAGGCTAC AAGGCTGCCG CACTGAACGG CGACATCGCC CAGAACCAGC GCGAGCGCGT TATCGAATCC CTCAAGGATG GCCGTCTGGA CATCGTTGTG GCGACCGACG TTGCTGCCCG TGGTCTTGAC GTTCCGCGTA TCACCCACGT CTTCAACGTG GACATGCCTT ACGATCCGGA GTCCTACGTT CACCGTATCG GCCGTACCGG TCGTGCCGGT CGCGAAGGTC GCGCACTGCT GCTGGTGACG CCTCGTGAGC GCCGCATGCT GCAAGTGATC GAGCGTGTTA CCGGTCAGAA GGTTGCGGAA GTCCGCCTGC CGGATGCCCA GGCCGTTCTG GATGCGCGCA TCAAGAAACT GACCAACAGC CTGTCGCCGC TGGTCGCTGA TGCCGAATCG ACTCACGGTG ATCTGCTCGA TCGTCTGACT GCCGACATCG GCTGCAGCCC TCGCGCGCTT GCCGCTGCAC TGCTGCGCAA GGCTACCAAC GGTCAGGCAC TGACCCTGGC AGCCATCGAG CGCGAGCGTC CACTGGTTCC GAACAACGCC CCGCGCGGTG ATCGTCCAGA GCGCAGCAGC GACCGTGGTG ATCGTCCTGA GCGTGAGCGT CGTGCGCCGG TTCCATTGGC CGAAGGCCGT GCTCGTTGCC GTACCGCGCT GGGTGCGCGT GATGGTATCG CTGCCAAGAA CCTGCTGGGT GCCATTCTCA ACGAAGGCGG CCTGGCCCGC GAAGCGATCG GCCGTATCCA GGTCCGTGAC AGCTTCAGCC TGGTCGAACT GCCGGAAGAT GGTCTTGAGC GTCTGCTGAC CAAGCTCAAG GACACCCGTG TTGCTGGCAA GCAGCTCAAG CTGCGTCGCT ATCGCGAAGA CTGA
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Protein sequence | MTQEIGGFAA LELHPNIVAA VVATGYEEPS AIQQQSIPII LAGHDMIGQA QTGTGKTAAF ALPILHRIDP SKREPQALIL APTRELALQV ATAFETYAKQ MPGVTVVAVY GGAPMGPQLK AIRNGAQIVV ATPGRLCDHL RRDEKVLATV NHLVLDEADE MLKLGFMDDL EVIFKAMPET RQTVLFSATL PQSIRAIAER HLRDPKHVKI QTKTQTVTAI EQAHLLVHAD QKTSAVLSLL EVEDFDALIM FVRTKQATLD LASALEAKGY KAAALNGDIA QNQRERVIES LKDGRLDIVV ATDVAARGLD VPRITHVFNV DMPYDPESYV HRIGRTGRAG REGRALLLVT PRERRMLQVI ERVTGQKVAE VRLPDAQAVL DARIKKLTNS LSPLVADAES THGDLLDRLT ADIGCSPRAL AAALLRKATN GQALTLAAIE RERPLVPNNA PRGDRPERSS DRGDRPERER RAPVPLAEGR ARCRTALGAR DGIAAKNLLG AILNEGGLAR EAIGRIQVRD SFSLVELPED GLERLLTKLK DTRVAGKQLK LRRYRED
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