| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3178 |
|---|
| Symbol | lolA |
|---|
| ID | 3368700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3805304 |
|---|
| End bp | 3805927 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637653524 |
|---|
| Product | outer-membrane lipoprotein carrier protein |
|---|
| Protein accession | YP_236248 |
|---|
| Protein GI | 66046407 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
|---|
| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.308735 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0497193 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTTA TCCGCATGCT GTTGGCCACC GCACTGACCT TCTCCATGAT CCCCGCCCAT
GCCGACAGCA AGGACGTGGC GCGCCTGACC CAGTTGCTGG AGAAATCCCA GACCCTGACC
GCCCGCTTCT CGCAACTGAC GCTGGATGGT GGCGGTACCC AGTTGCAGGA AACCACCGGC
GAAATGGCCC TGCAGCGCCC CGGCTTGTTC AACTGGCACA CCGATGCGCC ACAGGAACAG
TTGATGGTCT CGGACGGCAA GAAAGTTTCG CTGTGGGACC CTGATCTGGA GCAGGTCACG
ATCAAGAAAC TCGATCAGCG CCTGACCCAG ACTCCAGCCT TGCTGCTGTC CGGTGACGTA
TCGAAGATCA GCGAAAGCTT CGACATCACC GCGAAAGAAG CAGGTGGCGT GATCGATTTC
ACGCTCAAGC CCAAAACCAA GGACACGCTG TTCGACAGCC TGCGCCTGTC GTTTCGCAAC
GGCATCATCA ACGACATGCA GTTGATCGAC AGCGTCGGGC AGCGCACCAA TATCCTGTTC
ACCGGGGTCA AGGCCAACGA GTCGATCGCA GCCAGCAAGT TTCAGTTCCA GATTCCCAAG
GGCGCTGATG TCATTCAAGA GTAA
|
|---|
| Protein sequence | MRLIRMLLAT ALTFSMIPAH ADSKDVARLT QLLEKSQTLT ARFSQLTLDG GGTQLQETTG
EMALQRPGLF NWHTDAPQEQ LMVSDGKKVS LWDPDLEQVT IKKLDQRLTQ TPALLLSGDV
SKISESFDIT AKEAGGVIDF TLKPKTKDTL FDSLRLSFRN GIINDMQLID SVGQRTNILF
TGVKANESIA ASKFQFQIPK GADVIQE
|
|---|
| |