Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3138 |
Symbol | |
ID | 3368659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 3763772 |
End bp | 3764968 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637653483 |
Product | major facilitator transporter |
Protein accession | YP_236208 |
Protein GI | 66046367 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.82105 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCACT CGTCCCAATC CCCGCACAAC GCTATGACCA TGACCCCGGC CATGGTCATG CTGTTCGCCT TCTGCTGCGG CGCGATTGTC GCCAACATCT ACTACGCACA GCCGATCATC GAGCTGATTG CGCCGGACAT CGGGCTGTCG AGCACGGCGG CCAGTCTGAT TGTCTCGTTG ACGCAGATCG GTTACGCCCT GGGTTTGTTC TTTCTGGTGC CGCTGGGTGA CTTGCTGGAG AACCGCAGGC TGATGCTGGT GACGACTGTC GTCGCGATTC TCAGCCTGCT GGGTGCCGCC TTCGCCGAGC AGCCGAATGT GTTTTTGCTG GTCTCGCTGC TGGTGGGCTT CAGTTCAGTA TCGGTGCAGA TGCTCATTCC GTTGGCGGCG CATCTGGCTC CGGAGGAGTC GCGTGGGCGG GTCGTTGGCG GGATCATGGG CGGACTGCTG CTGGGGATTC TGCTGGCGCG GCCGATTGCC AGTCTGGTGG CCGACCATTT CGGCTGGCGG GCGGTGTTTG GATCGGCGGC CGTGGTGATG ATCGGCATCA GCGTGGTACT GGCGACCACC ATGCCAAAAC GCCTCCCGGA TCATCGCGCG TCCTACGGCC AGTTGCTGTT CTCGCTGTGG ACTCTCCTTC GTACCCAGCC GGTGCTGCGT CAGCGTGCCT TTTATCAGGC GTGCATGTTC GCAACCTTCA GCCTGTTCTG GACCGCCGTC CCGCTGGAGC TGTCACGCAA TCATGGGCTG TCGCAAACGC AGATCGCGAT CTTCGCCCTG ATCGGCGCGA TCGGCGCCAT TGCCGCGCCC ATCAGCGGCC GACTGGCAGA CGCTGGCTAC ACCCGCATCG CCTCACTGGG CGCGCTGCTG TTCGGCGCGC TGAGCTTTCT TCCCGGCCTG GTTCATCCAG CGTACAGCGT GATTGGCCTG GCCATAACGG GCGTAGTGCT GGATTTCTGC GTGCAGACCA GCATGGTCCT GGGCCAGCGC ACGGTCTACG CGCTGGATGC CGCCAGCCGC AGCCGCCTCA ACGCGCTGTA CATGACCAGT ATTTTCATCG GCGGCGCGAT TGGCTCGGCA GTCGCCAGCC CACTGTTTGA TCACGGTGGC TGGACCTGGG TACTGATCGC CGGCACGGCA CTGCCGCTGA TTGCACTGCT CGCGCTGCTC AGGGATCGAT CCAGGCAGAA TGCGTAA
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Protein sequence | MPHSSQSPHN AMTMTPAMVM LFAFCCGAIV ANIYYAQPII ELIAPDIGLS STAASLIVSL TQIGYALGLF FLVPLGDLLE NRRLMLVTTV VAILSLLGAA FAEQPNVFLL VSLLVGFSSV SVQMLIPLAA HLAPEESRGR VVGGIMGGLL LGILLARPIA SLVADHFGWR AVFGSAAVVM IGISVVLATT MPKRLPDHRA SYGQLLFSLW TLLRTQPVLR QRAFYQACMF ATFSLFWTAV PLELSRNHGL SQTQIAIFAL IGAIGAIAAP ISGRLADAGY TRIASLGALL FGALSFLPGL VHPAYSVIGL AITGVVLDFC VQTSMVLGQR TVYALDAASR SRLNALYMTS IFIGGAIGSA VASPLFDHGG WTWVLIAGTA LPLIALLALL RDRSRQNA
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