| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3134 |
|---|
| Symbol | |
|---|
| ID | 3368655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3759349 |
|---|
| End bp | 3760635 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637653479 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_236204 |
|---|
| Protein GI | 66046363 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.352378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCT GGTATCGCGA TGTCACTTCC AAAGAGCGCA AGACCTTCTG GGCCTGTTTT
GGCGGCTGGT CGCTGGACGC GCTGGAAGTG CAGATGTTCG GTCTGGCCAT TCCGGCCCTG
ATTGCTGCCT TTGCCCTGAC CAAGGGCGAT GCCGGCCTGA TCAGTGCGGT AACGCTGGTG
ACCTCCGCGT TGGGTGGTTG GGTGGGCGGG GCGCTGTCCG ACCGCTACGG CCGGGTGCGC
ACGCTGCAGT GGATGATCCT GTGGTTTTCC TTGTTTACCT TTTTGTCTGC GTTCGTGACC
GGTTTCAACC AATTGCTGAT CGTCAAGGCA CTGCAGGGCT TTGGTATCGG TGGCGAGTGG
GCGGCAGGCG CGGTGTTGAT GGCCGAGACG ATCCAGTCCC GCTACCGCGG CAAAGTCATG
GCCACTGTGC AAAGTGCCTG GGCCGTGGGT TGGGGGCTGG CGGTGGTGCT GTTTACCCTG
ATTTATTCAT TTGTGCCGGA GGATATCGCC TGGCGGGTGA TGTTCTTTGT CGGCCTGTTG
CCTGCCCTGA TGATCATCTG GGTGCGACGC AACGTCGAAG AGCCGGACAG TTTTCAGCGC
ATGCAGAAAA GCGCTGCGCC GAAGGGCAGT TTCTTCAGAT CGATGGCCGG GATTTTTCGC
CCCGAGCTGC TGCGCGTTAC CTTGCTCGGT GGCTTGCTGG GCCTCGGTGC GCACGGCGGT
TATCACGCGG TCATGACCTG GTTGCCGACC TTCCTCAAAA CCGAGCGCAA CCTGTCCGTG
CTCAGTTCCG GCGGCTATCT GGCGGTCATT ATCGTTGCCT TCTGGTGCGG TTGCGTGTGC
AGCGGCCTGT TGATCGACCG TATTGGTCGA CGCAAGAACA TCATGCTGTT CGCCTTGTGC
TGCGTGGTCA CCGTGCAGTG CTACTTGATG CTGCCGTTGA GCAACACACA GATGCTGTTT
CTCGGCTTTC CGCTGGGCTT CTTTGCCGCA GGCATTCCGG CCAGCCTCGG CTCGTTTTTC
AACGAGCTGT ACCCGGCAGA GGTGCGGGGT GCCGGGGTGG GCTTCTGCTA CAACTTCGGG
CGTGTGCTGT CGGCAGTGTT CCCGTTTCTG GTGGGGCATA TGAGCCAGTC AATGTCGCTC
GGCAGCGCCA TCGGAATCGA CGCCGGCATT GCCTATGGCG TGGCGATGAT TGCTGCGTTC
TGTCTGCCGG AAACCCGTGG GCGCAACCTC GAGGCCACGC CGCCGGTTGC CGAACCACTG
GACAAGGGCG CAGCGCAGCA GGCTTGA
|
|---|
| Protein sequence | MFSWYRDVTS KERKTFWACF GGWSLDALEV QMFGLAIPAL IAAFALTKGD AGLISAVTLV
TSALGGWVGG ALSDRYGRVR TLQWMILWFS LFTFLSAFVT GFNQLLIVKA LQGFGIGGEW
AAGAVLMAET IQSRYRGKVM ATVQSAWAVG WGLAVVLFTL IYSFVPEDIA WRVMFFVGLL
PALMIIWVRR NVEEPDSFQR MQKSAAPKGS FFRSMAGIFR PELLRVTLLG GLLGLGAHGG
YHAVMTWLPT FLKTERNLSV LSSGGYLAVI IVAFWCGCVC SGLLIDRIGR RKNIMLFALC
CVVTVQCYLM LPLSNTQMLF LGFPLGFFAA GIPASLGSFF NELYPAEVRG AGVGFCYNFG
RVLSAVFPFL VGHMSQSMSL GSAIGIDAGI AYGVAMIAAF CLPETRGRNL EATPPVAEPL
DKGAAQQA
|
|---|
| |