| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3124 |
|---|
| Symbol | |
|---|
| ID | 3368645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3745488 |
|---|
| End bp | 3747620 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637653469 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_236194 |
|---|
| Protein GI | 66046353 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.319333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGC GTCGTACTCT CGTTTCACTT TGCGTTATCC AGGCTATCTC TCAAACTGCC
TGGGCCGATC AGGTGCCTGG CGTCCAGCCT GCCATGGAGC TGCAGAATAT CGATATCCAG
GGCGCCGCCA ATGCCGAAAC GGCACAAGGG CCGGTCGATG GTTATCGGGC CACACGCTCC
GCCAGCGCAA CGCGTACCGA TACCTCGTTG CACGAAACCC CGCAATCGGT CAGCGTCGTG
ACCCGCGAAG CGGTCGAGGA CATCGGTTCC ACACGTTTGC AGGATGCTCT CGACTACGCG
GGTGGCGTCG GGCGAGCCAA CAACTTCGGC GGCCAGGGGC TGACCACCTT TACGGTGCGC
GGCTTTACCA CCGGCGAGTT CTATCGCAAC GGCTTCCCGA TCAATCGTGG TTATCCGAAC
ATGCCGGACG CCAACACCAT CGAGCGTCTT GAGGTGCTGC GTGGTCCGGC CACCACGCTC
TATGGTCGCG GCGATCCGGG CGGCACCTTC AATGTGCTTT CCAAACAGCC GCTGGCCGAG
CCTTCCGTGA CGCTGGGCAG TCAGCTCAAT GATCAGGGCA TGAAGCGCGG AACGCTGGAT
GCCTCCGGGC CACTGGATGA CGAAGGCCGG TTTGCCTATC GCCTGAATGT GGTGGGTGAG
GGCGGCGATA CGTTCCGTGA CCACGTCGAA ACCGAGCGCT ATGGCGTGGC GCCAGTATTG
AGCTGGCAGG TCAACGACGC CACGCGCATC ACCTTCGAAG GCGACTTCAT GCGCAACAAC
GCGCCGCTGG ATCGCGGTTT GACGCGGTAT GCCAACCAGA CGGGCACCGC TTCCCGCGAC
ACGTTCTTCG GCGAGAAGAG TGTGGGCAAG CTGCATAACG ATAACAACAT GGCACAGCTG
CGCTTCGAGC ATGACCTCAA CCCGGACTGG ACGCTGGGCG GTGGCTTACA GATCCTTGAC
GGCTCCCTGC AGGGCGATGC CATCGAGGCC AACGGGCTGG CGGCGGACGG TCGCACGCTC
GGGCGCAACT TCAACTATCG CAAGCTGGAA TGGACCGATC GCGATGTGCA GCTGAATCTG
ACCGGGCATT TTTCAGCGGG CGGTTTCGAG CACACGCTGC TGACCGGTGT CGAGTACGAA
GATTATGACT ACAAGTCGAT CATTCAACGT TCCAGCGGTG CAGTAGCTGC CTACCCGATC
GACCTCTTCA ATCCGGTCTA CGGCCAGGCT CGTCCGGCAC TGACCCGAAC GACCACCCAT
GACAAGGAAA ACCTCAAGAC CTGGGCTGCC TTCGTACAGG ACCAGGTGGC CCTGACCGAG
CGCCTGAAGC TGCTGGGCGG TGTGCGTCTG GAGCGTTTCG AACATGATTA CGATTCTTTC
CTGCCCGGCA CCAGCAGCTG GACTGCCAGC GATAACGCGG TCACACCGCG CCTCGGCCTG
AGCTACGACC TGACCGACGA CCTTGCCGTC TACGCCACCA CCGCTCGCTC GTTCAAGCCC
AACAGCGGTG CCAGCCGACT GGGTGGCGGG TTCAAGCCGG AGGAGGGCAA GTCCTATGAA
GTCGGAACCA AGTGGGAAGC GCTGGACGGG CAGCTGAGTG TCGACACGGC GATCTATCAG
ATCGAAAAGC GTAACGTGCT GACCACCGAT CCGGTCGATT CAACGTTCAG TGTGGCGGCG
GGCGAGGTGC GCAGTCGCGG CCTGGACCTG AACGTGGTCG GCAACCTGAC TCCGCAATGG
CGGGTAATGG GCAGCTACGC CTACGTGGAC GCCGAGGTCA CCAAGGACAA CACGCTACGC
TCCGGTACAC GGTTGATGAA CATTCCCGAG CAAACGTTCA GCCTGCTCAA CGTCTACGAG
TTTCAGGACG GCGCCCTGCG TGGTCTGGGC CTGGGCGGCG GCGGTCGCTA TGTCGACCAG
CGCGCCGGGC GGACAGCCAA CACCTCTTTC TCGATGGACA GCTATACAGT GTTTGACCTG
TTGGCCTATT ACAAGGTCAA CCCGCACGTG AAGCTCAATC TGGACCTGAA GAATGTGTTC
GACACAGACT ATGAGGAAGG CTCTTTCGGC AATGTCTATG CCTATCCGGG GGCTCCACGG
ACAGTGCAGG TGGGGATTGC CTATACGTTG TGA
|
|---|
| Protein sequence | MSMRRTLVSL CVIQAISQTA WADQVPGVQP AMELQNIDIQ GAANAETAQG PVDGYRATRS
ASATRTDTSL HETPQSVSVV TREAVEDIGS TRLQDALDYA GGVGRANNFG GQGLTTFTVR
GFTTGEFYRN GFPINRGYPN MPDANTIERL EVLRGPATTL YGRGDPGGTF NVLSKQPLAE
PSVTLGSQLN DQGMKRGTLD ASGPLDDEGR FAYRLNVVGE GGDTFRDHVE TERYGVAPVL
SWQVNDATRI TFEGDFMRNN APLDRGLTRY ANQTGTASRD TFFGEKSVGK LHNDNNMAQL
RFEHDLNPDW TLGGGLQILD GSLQGDAIEA NGLAADGRTL GRNFNYRKLE WTDRDVQLNL
TGHFSAGGFE HTLLTGVEYE DYDYKSIIQR SSGAVAAYPI DLFNPVYGQA RPALTRTTTH
DKENLKTWAA FVQDQVALTE RLKLLGGVRL ERFEHDYDSF LPGTSSWTAS DNAVTPRLGL
SYDLTDDLAV YATTARSFKP NSGASRLGGG FKPEEGKSYE VGTKWEALDG QLSVDTAIYQ
IEKRNVLTTD PVDSTFSVAA GEVRSRGLDL NVVGNLTPQW RVMGSYAYVD AEVTKDNTLR
SGTRLMNIPE QTFSLLNVYE FQDGALRGLG LGGGGRYVDQ RAGRTANTSF SMDSYTVFDL
LAYYKVNPHV KLNLDLKNVF DTDYEEGSFG NVYAYPGAPR TVQVGIAYTL
|
|---|
| |